Model info
| Transcription factor | SOX8 (GeneCards) | ||||||||
| Model | SOX8_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WvACTGhAATTSWYbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 4026 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group E {4.1.1.5} | ||||||||
| HGNC | HGNC:11203 | ||||||||
| EntrezGene | GeneID:30812 (SSTAR profile) | ||||||||
| UniProt ID | SOX8_HUMAN | ||||||||
| UniProt AC | P57073 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX8 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX8 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1435.608 | 327.92 | 293.31 | 2344.188 |
| 02 | 729.765 | 2168.743 | 1199.496 | 303.022 |
| 03 | 3609.383 | 350.537 | 218.434 | 222.672 |
| 04 | 443.087 | 3569.103 | 183.117 | 205.72 |
| 05 | 47.324 | 64.276 | 33.198 | 4256.228 |
| 06 | 666.327 | 147.82 | 3549.973 | 36.906 |
| 07 | 1264.494 | 2008.381 | 537.579 | 590.573 |
| 08 | 3519.247 | 849.641 | 1.942 | 30.196 |
| 09 | 4268.235 | 101.006 | 4.238 | 27.547 |
| 10 | 50.856 | 137.755 | 2.825 | 4209.59 |
| 11 | 4.238 | 93.256 | 2.119 | 4301.413 |
| 12 | 68.514 | 1186.797 | 2507.758 | 637.957 |
| 13 | 2829.984 | 110.188 | 55.094 | 1405.76 |
| 14 | 102.07 | 596.582 | 277.26 | 3425.114 |
| 15 | 692.869 | 802.998 | 1623.875 | 1281.284 |
| 16 | 776.207 | 1655.631 | 589.676 | 1379.513 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.266 | -1.206 | -1.317 | 0.755 |
| 02 | -0.41 | 0.678 | 0.086 | -1.285 |
| 03 | 1.187 | -1.14 | -1.609 | -1.59 |
| 04 | -0.907 | 1.175 | -1.784 | -1.669 |
| 05 | -3.105 | -2.81 | -3.441 | 1.351 |
| 06 | -0.5 | -1.995 | 1.17 | -3.342 |
| 07 | 0.139 | 0.601 | -0.714 | -0.621 |
| 08 | 1.161 | -0.258 | -5.609 | -3.53 |
| 09 | 1.354 | -2.369 | -5.159 | -3.616 |
| 10 | -3.036 | -2.065 | -5.411 | 1.34 |
| 11 | -5.159 | -2.448 | -5.566 | 1.362 |
| 12 | -2.748 | 0.076 | 0.823 | -0.544 |
| 13 | 0.944 | -2.284 | -2.959 | 0.245 |
| 14 | -2.359 | -0.61 | -1.373 | 1.134 |
| 15 | -0.461 | -0.314 | 0.389 | 0.152 |
| 16 | -0.348 | 0.408 | -0.622 | 0.226 |