Model info
Transcription factorSOX9
ModelSOX9_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
1
ConsensusYSWTTGKYY
Best auROC (human)0.7772393294009072
Best auROC (mouse)0.8921795100649863
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words501
TF familySOX-related factors{4.1.1}
TF subfamilyGroup E{4.1.1.5}
HGNC11204
EntrezGene6662
UniProt IDSOX9_HUMAN
UniProt ACP48436
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.789545
0.0005 6.412044999999999
0.0001 7.775985
GTEx tissue expression atlas SOX9 expression
ReMap ChIP-seq dataset list SOX9 datasets
Motifs in JASPAR
PCM
ACGT
0123.0226.032.0219.0
0216.0319.0101.064.0
03280.029.016.0175.0
043.04.022.0471.0
053.00.012.0485.0
0612.039.0438.011.0
077.08.0192.0293.0
0815.0195.064.0226.0
0939.0206.015.0240.0
PWM
ACGT
01-1.640.587-1.3280.555
02-1.9750.929-0.21-0.658
030.8-1.421-1.9750.333
04-3.325-3.126-1.6811.317
05-3.325-4.4-2.2341.347
06-2.234-1.1381.245-2.311
07-2.694-2.5840.4250.845
08-2.0340.44-0.6580.587
09-1.1380.495-2.0340.646