Model info
| Transcription factor | SOX9 (GeneCards) | ||||||||
| Model | SOX9_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | YSWTTGKYY | ||||||||
| Best auROC (human) | 0.777 | ||||||||
| Best auROC (mouse) | 0.892 | ||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | 25 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group E {4.1.1.5} | ||||||||
| HGNC | HGNC:11204 | ||||||||
| EntrezGene | GeneID:6662 (SSTAR profile) | ||||||||
| UniProt ID | SOX9_HUMAN | ||||||||
| UniProt AC | P48436 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX9 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX9 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 23.0 | 226.0 | 32.0 | 219.0 |
| 02 | 16.0 | 319.0 | 101.0 | 64.0 |
| 03 | 280.0 | 29.0 | 16.0 | 175.0 |
| 04 | 3.0 | 4.0 | 22.0 | 471.0 |
| 05 | 3.0 | 0.0 | 12.0 | 485.0 |
| 06 | 12.0 | 39.0 | 438.0 | 11.0 |
| 07 | 7.0 | 8.0 | 192.0 | 293.0 |
| 08 | 15.0 | 195.0 | 64.0 | 226.0 |
| 09 | 39.0 | 206.0 | 15.0 | 240.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.64 | 0.587 | -1.328 | 0.555 |
| 02 | -1.975 | 0.929 | -0.21 | -0.658 |
| 03 | 0.8 | -1.421 | -1.975 | 0.333 |
| 04 | -3.325 | -3.126 | -1.681 | 1.317 |
| 05 | -3.325 | -4.4 | -2.234 | 1.347 |
| 06 | -2.234 | -1.138 | 1.245 | -2.311 |
| 07 | -2.694 | -2.584 | 0.425 | 0.845 |
| 08 | -2.034 | 0.44 | -0.658 | 0.587 |
| 09 | -1.138 | 0.495 | -2.034 | 0.646 |