Model info
Transcription factorSox9
ModelSOX9_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusAAdRvnnbYWTTGTKY
Best auROC (human)0.7181183587575777
Best auROC (mouse)0.9814738162593991
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup E{4.1.1.5}
MGI98371
EntrezGene20682
UniProt IDSOX9_MOUSE
UniProt ACQ04887
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.89431
0.0005 5.985609999999999
0.0001 8.15991
GTEx tissue expression atlas Sox9 expression
Motifs in JASPAR
PCM
ACGT
01402.069.022.07.0
02440.02.028.030.0
03206.03.0144.0147.0
04107.025.0304.064.0
05117.097.0261.025.0
06117.0129.0169.085.0
0795.0141.0149.0115.0
0833.0214.0128.0125.0
0918.0398.031.053.0
10201.039.07.0253.0
110.068.047.0385.0
120.00.00.0500.0
132.02.0495.01.0
146.01.00.0493.0
1519.066.097.0318.0
1628.0283.035.0154.0
PWM
ACGT
011.16-0.584-1.681-2.694
021.25-3.573-1.454-1.389
030.495-3.3250.140.16
04-0.153-1.5610.881-0.658
05-0.065-0.250.73-1.561
06-0.0650.0310.298-0.38
07-0.2710.1190.174-0.082
08-1.2980.5330.0230.0
09-1.8681.15-1.358-0.841
100.47-1.138-2.6940.699
11-4.4-0.599-0.9581.117
12-4.4-4.4-4.41.377
13-3.573-3.5731.367-3.903
14-2.819-3.903-4.41.363
15-1.818-0.628-0.250.926
16-1.4540.81-1.2420.206