Model info
Transcription factorSox9
ModelSOX9_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusbCWYTGTKYhb
Best auROC (human)0.679
Best auROC (mouse)0.93
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words499
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
MGIMGI:98371
EntrezGeneGeneID:20682
(SSTAR profile)
UniProt IDSOX9_MOUSE
UniProt ACQ04887
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.774609999999999
0.0005 6.536845
0.0001 7.988855
GTEx tissue expression atlas Sox9 expression
Motifs in JASPAR
PCM
ACGT
0122.0213.082.0182.0
0212.0397.020.070.0
0383.059.02.0355.0
041.0104.043.0351.0
054.05.016.0474.0
065.074.0405.015.0
074.07.04.0484.0
0811.092.0118.0278.0
0922.0332.09.0136.0
1059.0166.023.0251.0
1164.0203.0126.0106.0
PWM
ACGT
01-1.6790.53-0.4130.374
02-2.2321.149-1.768-0.568
03-0.401-0.735-3.5711.038
04-3.901-0.179-1.0421.027
05-3.124-2.959-1.9731.326
06-2.959-0.5141.169-2.032
07-3.124-2.692-3.1241.347
08-2.309-0.3-0.0550.795
09-1.6790.971-2.4820.085
10-0.7350.283-1.6380.693
11-0.6560.4820.01-0.161