Model info
Transcription factorSREBF2
ModelSRBP2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
B
Motif rank
0
ConsensusvvvWGGvSWGRnb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2363
TF familybHLH-ZIP factors{1.2.6}
TF subfamilySREBP factors{1.2.6.3}
HGNC11290
EntrezGene6721
UniProt IDSRBP2_HUMAN
UniProt ACQ12772
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.713559999999999
0.0005 5.45376
0.0001 6.900120000000001
GTEx tissue expression atlas SREBF2 expression
ReMap ChIP-seq dataset list SREBF2 datasets
Motifs in JASPAR
PCM
ACGT
01609.707577.904878.334276.055
02405.721707.176964.952264.152
03494.205386.7331331.932129.129
04350.404113.691143.5321734.374
0550.24477.7382128.85985.159
06121.65613.3662201.5235.456
07411.337516.6251149.069264.969
08260.005537.91514.6929.404
09677.944351.21725.8051287.034
1058.592183.522042.55157.336
111637.54346.971526.174131.312
12368.512440.031865.337668.12
13371.105490.7931055.59424.512
PWM
ACGT
010.04-0.0130.404-0.748
02-0.3650.1880.498-0.792
03-0.169-0.4130.82-1.5
04-0.511-1.625-1.3961.084
05-2.421-1.9981.288-1.909
06-1.559-3.6481.322-4.375
07-0.352-0.1250.673-0.789
08-0.808-0.0850.948-2.931
090.146-0.509-3.0530.786
10-2.273-1.1531.247-2.294
111.026-2.486-0.106-1.484
12-0.461-0.2850.390.132
13-0.454-0.1760.588-0.32