Model info
Transcription factorSRF
ModelSRF_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnhbbCCWWWTWWGGnndbn
Best auROC (human)0.9697587076139753
Best auROC (mouse)0.9809767480920636
Peak sets in benchmark (human)46
Peak sets in benchmark (mouse)37
Aligned words500
TF familyResponders to external signals (SRF/RLM1){5.1.2}
TF subfamilySRF{5.1.2.0.1}
HGNC11291
EntrezGene6722
UniProt IDSRF_HUMAN
UniProt ACP11831
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.915610000000001
0.0005 11.81541
0.0001 15.78786
GTEx tissue expression atlas SRF expression
ReMap ChIP-seq dataset list SRF datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.020.018.043.031.031.017.083.018.019.015.041.09.019.07.0103.0
0211.016.027.030.05.018.06.060.08.018.010.021.012.043.057.0158.0
035.01.022.08.06.08.025.056.07.035.017.041.023.043.097.0106.0
040.040.01.00.02.081.00.04.02.0152.06.01.03.0194.02.012.0
051.04.00.02.02.0437.01.027.00.09.00.00.01.011.01.04.0
060.00.00.04.0132.026.013.0290.00.01.00.01.013.04.03.013.0
0721.02.011.0111.02.07.05.017.00.01.05.010.033.04.014.0257.0
0840.02.03.011.05.00.00.09.012.04.012.07.0215.010.035.0135.0
095.09.08.0250.00.02.00.014.00.06.02.042.01.06.09.0146.0
103.02.01.00.05.09.02.07.09.05.00.05.0205.039.015.0193.0
1136.08.09.0169.07.019.05.024.00.04.04.010.018.08.017.0162.0
125.00.056.00.04.00.035.00.06.01.028.00.031.05.0323.06.0
130.03.042.01.00.00.05.01.010.09.0406.017.00.02.04.00.0
146.03.01.00.04.06.00.04.083.0119.0146.0109.02.014.01.02.0
1519.035.029.012.041.039.019.043.028.075.025.020.026.049.022.018.0
1645.07.036.026.0120.017.022.039.035.012.020.028.021.018.026.028.0
1741.041.053.086.04.05.019.026.09.034.027.034.011.022.037.051.0
1823.016.016.010.041.021.022.018.025.033.057.021.030.033.088.046.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-0.439-0.5430.316-0.008-0.008-0.5990.969-0.543-0.49-0.7210.269-1.215-0.49-1.4541.184
02-1.022-0.658-0.144-0.04-1.77-0.543-1.60.646-1.328-0.543-1.114-0.392-0.9380.3160.5951.611
03-1.77-3.126-0.346-1.328-1.6-1.328-0.220.578-1.4540.112-0.5990.269-0.3020.3161.1241.213
04-4.40.244-3.126-4.4-2.5840.945-4.4-1.975-2.5841.572-1.6-3.126-2.2341.815-2.584-0.938
05-3.126-1.975-4.4-2.584-2.5842.626-3.126-0.144-4.4-1.215-4.4-4.4-3.126-1.022-3.126-1.975
06-4.4-4.4-4.4-1.9751.431-0.181-0.862.217-4.4-3.126-4.4-3.126-0.86-1.975-2.234-0.86
07-0.392-2.584-1.0221.259-2.584-1.454-1.77-0.599-4.4-3.126-1.77-1.1140.054-1.975-0.7882.096
080.244-2.584-2.234-1.022-1.77-4.4-4.4-1.215-0.938-1.975-0.938-1.4541.918-1.1140.1121.454
09-1.77-1.215-1.3282.069-4.4-2.584-4.4-0.788-4.4-1.6-2.5840.293-3.126-1.6-1.2151.532
10-2.234-2.584-3.126-4.4-1.77-1.215-2.584-1.454-1.215-1.77-4.4-1.771.8710.219-0.7211.81
110.14-1.328-1.2151.678-1.454-0.49-1.77-0.26-4.4-1.975-1.975-1.114-0.543-1.328-0.5991.636
12-1.77-4.40.578-4.4-1.975-4.40.112-4.4-1.6-3.126-0.108-4.4-0.008-1.772.324-1.6
13-4.4-2.2340.293-3.126-4.4-4.4-1.77-3.126-1.114-1.2152.553-0.599-4.4-2.584-1.975-4.4
14-1.6-2.234-3.126-4.4-1.975-1.6-4.4-1.9750.9691.3281.5321.241-2.584-0.788-3.126-2.584
15-0.490.112-0.074-0.9380.2690.219-0.490.316-0.1080.868-0.22-0.439-0.1810.445-0.346-0.543
160.361-1.4540.14-0.1811.336-0.599-0.3460.2190.112-0.938-0.439-0.108-0.392-0.543-0.181-0.108
170.2690.2690.5231.004-1.975-1.77-0.49-0.181-1.2150.083-0.1440.083-1.022-0.3460.1670.485
18-0.302-0.658-0.658-1.1140.269-0.392-0.346-0.543-0.220.0540.595-0.392-0.040.0541.0270.383