Model info
Transcription factorSRF
ModelSRF_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensushhbCCWWWTWTGGbvddd
Best auROC (human)0.9559623399757533
Best auROC (mouse)0.9791924965719108
Peak sets in benchmark (human)46
Peak sets in benchmark (mouse)37
Aligned words131
TF familyResponders to external signals (SRF/RLM1){5.1.2}
TF subfamilySRF{5.1.2.0.1}
HGNC11291
EntrezGene6722
UniProt IDSRF_HUMAN
UniProt ACP11831
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.79906
0.0005 5.82006
0.0001 7.94256
GTEx tissue expression atlas SRF expression
ReMap ChIP-seq dataset list SRF datasets
Motifs in JASPAR
PCM
ACGT
0117.027.012.075.0
0216.025.014.076.0
0319.020.052.040.0
044.0121.02.04.0
050.0123.01.07.0
0642.010.04.075.0
0717.07.04.0103.0
0879.03.06.043.0
090.01.01.0129.0
1069.06.00.056.0
1125.03.01.0102.0
127.03.0121.00.0
135.01.0125.00.0
1414.028.045.044.0
1521.077.020.013.0
1664.010.012.045.0
1722.020.028.061.0
1841.015.042.033.0
PWM
ACGT
01-0.623-0.185-0.9440.808
02-0.679-0.259-0.8030.821
03-0.519-0.4710.4490.193
04-1.8731.28-2.356-1.873
05-3.3281.297-2.728-1.419
060.241-1.108-1.8730.808
07-0.623-1.419-1.8731.121
080.859-2.086-1.5490.264
09-3.328-2.728-2.7281.344
100.726-1.549-3.3280.521
11-0.259-2.086-2.7281.111
12-1.419-2.0861.28-3.328
13-1.698-2.7281.313-3.328
14-0.803-0.1510.3080.286
15-0.4250.834-0.471-0.871
160.652-1.108-0.9440.308
17-0.38-0.471-0.1510.605
180.217-0.7390.2410.007