Model info
Transcription factorNR5A1
ModelSTF1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusbbYCAAGGYCW
Best auROC (human)0.7585233878745958
Best auROC (mouse)0.8977597668575399
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words500
TF familyFTZ-F1-related receptors (NR5){2.1.5}
TF subfamilyFTZ-F1 (SF-1) (NR5A1){2.1.5.0.1}
HGNC7983
EntrezGene2516
UniProt IDSTF1_HUMAN
UniProt ACQ13285
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.93209
0.0005 5.81942
0.0001 7.75242
GTEx tissue expression atlas NR5A1 expression
ReMap ChIP-seq dataset list NR5A1 datasets
Motifs in JASPAR
PCM
ACGT
0167.0123.0210.0100.0
0227.0196.090.0187.0
0328.0220.014.0238.0
043.0459.028.010.0
05420.058.014.08.0
06459.02.036.03.0
0720.01.0474.05.0
0813.020.0457.010.0
0951.0225.019.0205.0
1011.0450.04.035.0
11378.033.037.052.0
PWM
ACGT
01-0.613-0.0160.514-0.22
02-1.4890.445-0.3240.399
03-1.4540.56-2.0960.638
04-3.3251.292-1.454-2.394
051.203-0.754-2.096-2.584
061.292-3.573-1.215-3.325
07-1.77-3.9031.324-2.961
08-2.163-1.771.287-2.394
09-0.8790.582-1.8180.49
10-2.3111.272-3.126-1.242
111.098-1.298-1.189-0.86