Model info
Transcription factorNr5a1
ModelSTF1_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusbbYCAAGGYCW
Best auROC (human)0.7585233878745958
Best auROC (mouse)0.8977597668575399
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words500
TF familyFTZ-F1-related receptors (NR5){2.1.5}
TF subfamilyFTZ-F1 (SF-1) (NR5A1){2.1.5.0.1}
MGI1346833
EntrezGene26423
UniProt IDSTF1_MOUSE
UniProt ACP33242
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.98729
0.0005 5.858555
0.0001 7.7745
GTEx tissue expression atlas Nr5a1 expression
Motifs in JASPAR
PCM
ACGT
0167.0123.0210.0100.0
0227.0196.090.0187.0
0328.0220.014.0238.0
043.0459.028.010.0
05420.058.014.08.0
06459.02.036.03.0
0720.01.0474.05.0
0813.020.0457.010.0
0951.0225.019.0205.0
1011.0450.04.035.0
11378.033.037.052.0
PWM
ACGT
01-0.613-0.0160.514-0.22
02-1.4890.445-0.3240.399
03-1.4540.56-2.0960.638
04-3.3251.292-1.454-2.394
051.203-0.754-2.096-2.584
061.292-3.573-1.215-3.325
07-1.77-3.9031.324-2.961
08-2.163-1.771.287-2.394
09-0.8790.582-1.8180.49
10-2.3111.272-3.126-1.242
111.098-1.298-1.189-0.86