Model info
Transcription factorTAF1
ModelTAF1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusvRRvATGGMKRMvvnvvv
Best auROC (human)0.8622680088919349
Best auROC (mouse)0.9009914407381131
Peak sets in benchmark (human)61
Peak sets in benchmark (mouse)2
Aligned words500
TF familyTCF-7-related factors{4.1.3}
TF subfamilyTAF-1 (TAF-2A, TAF(II)250) [1]{4.1.3.0.5}
HGNC11535
EntrezGene6872
UniProt IDTAF1_HUMAN
UniProt ACP21675
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.68761
0.0005 9.30386
0.0001 12.654510000000002
GTEx tissue expression atlas TAF1 expression
ReMap ChIP-seq dataset list TAF1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0153.01.039.04.0138.02.026.06.086.00.071.08.040.04.015.07.0
02216.024.050.027.00.01.03.03.083.031.010.027.010.05.09.01.0
0384.040.0173.012.019.021.018.03.011.021.038.02.010.019.028.01.0
04100.04.019.01.096.03.00.02.0205.015.034.03.012.04.02.00.0
0531.08.027.0347.00.04.03.019.06.00.06.043.01.00.02.03.0
060.03.034.01.00.02.09.01.00.03.034.01.03.04.0394.011.0
071.00.01.01.01.00.011.00.031.05.0421.014.03.00.010.01.0
089.021.04.02.00.04.00.01.050.0356.06.031.01.013.01.01.0
097.02.046.05.019.019.0291.065.01.01.04.05.05.03.023.04.0
107.02.022.01.07.01.014.03.047.038.0250.029.09.05.061.04.0
1116.035.010.09.02.030.04.010.076.0217.025.029.01.028.01.07.0
1215.020.047.013.071.070.0121.048.017.03.014.06.08.03.035.09.0
1318.07.080.06.015.029.034.018.030.058.0109.020.011.023.033.09.0
1414.021.021.018.019.042.034.022.065.0104.053.034.012.027.08.06.0
1520.014.058.018.037.051.084.022.021.035.039.021.010.016.041.013.0
1619.09.056.04.044.010.043.019.041.040.0110.031.015.010.035.014.0
1713.041.053.012.013.017.020.019.049.086.081.028.01.020.032.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.523-3.1260.219-1.9751.476-2.584-0.181-1.61.004-4.40.814-1.3280.244-1.975-0.721-1.454
021.923-0.260.465-0.144-4.4-3.126-2.234-2.2340.969-0.008-1.114-0.144-1.114-1.77-1.215-3.126
030.9810.2441.701-0.938-0.49-0.392-0.543-2.234-1.022-0.3920.193-2.584-1.114-0.49-0.108-3.126
041.155-1.975-0.49-3.1261.114-2.234-4.4-2.5841.871-0.7210.083-2.234-0.938-1.975-2.584-4.4
05-0.008-1.328-0.1442.396-4.4-1.975-2.234-0.49-1.6-4.4-1.60.316-3.126-4.4-2.584-2.234
06-4.4-2.2340.083-3.126-4.4-2.584-1.215-3.126-4.4-2.2340.083-3.126-2.234-1.9752.523-1.022
07-3.126-4.4-3.126-3.126-3.126-4.4-1.022-4.4-0.008-1.772.589-0.788-2.234-4.4-1.114-3.126
08-1.215-0.392-1.975-2.584-4.4-1.975-4.4-3.1260.4652.422-1.6-0.008-3.126-0.86-3.126-3.126
09-1.454-2.5840.383-1.77-0.49-0.492.220.726-3.126-3.126-1.975-1.77-1.77-2.234-0.302-1.975
10-1.454-2.584-0.346-3.126-1.454-3.126-0.788-2.2340.4040.1932.069-0.074-1.215-1.770.663-1.975
11-0.6580.112-1.114-1.215-2.584-0.04-1.975-1.1140.8811.927-0.22-0.074-3.126-0.108-3.126-1.454
12-0.721-0.4390.404-0.860.8140.81.3450.425-0.599-2.234-0.788-1.6-1.328-2.2340.112-1.215
13-0.543-1.4540.932-1.6-0.721-0.0740.083-0.543-0.040.6131.241-0.439-1.022-0.3020.054-1.215
14-0.788-0.392-0.392-0.543-0.490.2930.083-0.3460.7261.1940.5230.083-0.938-0.144-1.328-1.6
15-0.439-0.7880.613-0.5430.1670.4850.981-0.346-0.3920.1120.219-0.392-1.114-0.6580.269-0.86
16-0.49-1.2150.578-1.9750.339-1.1140.316-0.490.2690.2441.25-0.008-0.721-1.1140.112-0.788
17-0.860.2690.523-0.938-0.86-0.599-0.439-0.490.4451.0040.945-0.108-3.126-0.4390.023-0.721