Model info
Transcription factorTAF1
ModelTAF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusRRRRhGGMRGhRSvvv
Best auROC (human)0.8939519773593111
Best auROC (mouse)0.9104462972461655
Peak sets in benchmark (human)61
Peak sets in benchmark (mouse)2
Aligned words500
TF familyTCF-7-related factors{4.1.3}
TF subfamilyTAF-1 (TAF-2A, TAF(II)250) [1]{4.1.3.0.5}
HGNC11535
EntrezGene6872
UniProt IDTAF1_HUMAN
UniProt ACP21675
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.18261
0.0005 5.02901
0.0001 6.74831
GTEx tissue expression atlas TAF1 expression
ReMap ChIP-seq dataset list TAF1 datasets
Motifs in JASPAR
PCM
ACGT
01253.029.0203.015.0
02376.023.078.023.0
03212.028.0256.04.0
04265.048.0180.07.0
05175.086.017.0222.0
0645.016.0419.020.0
079.07.0479.05.0
08162.0326.04.08.0
09116.028.0311.045.0
1035.032.0416.017.0
11141.0270.030.059.0
1290.032.0322.056.0
1379.083.0316.022.0
14151.0206.094.049.0
1595.073.0263.069.0
16136.069.0264.031.0
PWM
ACGT
010.699-1.4210.48-2.034
021.093-1.64-0.464-1.64
030.523-1.4540.711-3.126
040.745-0.9380.361-2.694
050.333-0.368-1.920.569
06-1.0-1.9751.201-1.77
07-2.484-2.6941.334-2.961
080.2560.951-3.126-2.584
09-0.074-1.4540.904-1.0
10-1.242-1.3281.194-1.92
110.1190.763-1.389-0.737
12-0.324-1.3280.939-0.788
13-0.452-0.4030.92-1.681
140.1870.495-0.281-0.918
15-0.271-0.5290.737-0.584
160.083-0.5840.741-1.358