Model info
Transcription factorTaf1
ModelTAF1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvRRRAWGGMRRhbv
Best auROC (human)0.8128522323591011
Best auROC (mouse)0.9562437795276857
Peak sets in benchmark (human)61
Peak sets in benchmark (mouse)2
Aligned words500
TF familyTCF-7-related factors{4.1.3}
TF subfamilyTAF-1 (TAF-2A, TAF(II)250) [1]{4.1.3.0.5}
MGI1336878
EntrezGene270627
UniProt IDTAF1_MOUSE
UniProt ACQ80UV9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.68351
0.0005 5.47836
0.0001 7.09126
GTEx tissue expression atlas Taf1 expression
Motifs in JASPAR
PCM
ACGT
01144.0168.0156.032.0
02361.09.0119.011.0
03376.018.083.023.0
04151.047.0293.09.0
05439.026.031.04.0
06157.022.050.0271.0
0772.08.0410.010.0
0824.06.0462.08.0
09145.0334.012.09.0
10108.018.0336.038.0
1178.042.0365.015.0
12137.0260.051.052.0
1375.090.0254.081.0
1468.0110.0270.052.0
PWM
ACGT
010.140.2930.219-1.328
021.053-2.484-0.049-2.311
031.093-1.868-0.403-1.64
040.187-0.9580.845-2.484
051.247-1.525-1.358-3.126
060.225-1.681-0.8980.767
07-0.543-2.5841.179-2.394
08-1.6-2.8191.298-2.584
090.1470.975-2.234-2.484
10-0.144-1.8680.981-1.163
11-0.464-1.0671.063-2.034
120.0910.726-0.879-0.86
13-0.503-0.3240.703-0.427
14-0.599-0.1260.763-0.86