Model info
| Transcription factor | Taf1 | ||||||||
| Model | TAF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRRRAWGGMRRhbv | ||||||||
| Best auROC (human) | 0.813 | ||||||||
| Best auROC (mouse) | 0.956 | ||||||||
| Peak sets in benchmark (human) | 61 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TCF-7-related factors {4.1.3} | ||||||||
| TF subfamily | TAF-1 (TAF-2A, TAF(II)250) [1] {4.1.3.0.5} | ||||||||
| MGI | MGI:1336878 | ||||||||
| EntrezGene | GeneID:270627 (SSTAR profile) | ||||||||
| UniProt ID | TAF1_MOUSE | ||||||||
| UniProt AC | Q80UV9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Taf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 144.0 | 168.0 | 156.0 | 32.0 |
| 02 | 361.0 | 9.0 | 119.0 | 11.0 |
| 03 | 376.0 | 18.0 | 83.0 | 23.0 |
| 04 | 151.0 | 47.0 | 293.0 | 9.0 |
| 05 | 439.0 | 26.0 | 31.0 | 4.0 |
| 06 | 157.0 | 22.0 | 50.0 | 271.0 |
| 07 | 72.0 | 8.0 | 410.0 | 10.0 |
| 08 | 24.0 | 6.0 | 462.0 | 8.0 |
| 09 | 145.0 | 334.0 | 12.0 | 9.0 |
| 10 | 108.0 | 18.0 | 336.0 | 38.0 |
| 11 | 78.0 | 42.0 | 365.0 | 15.0 |
| 12 | 137.0 | 260.0 | 51.0 | 52.0 |
| 13 | 75.0 | 90.0 | 254.0 | 81.0 |
| 14 | 68.0 | 110.0 | 270.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.14 | 0.293 | 0.219 | -1.328 |
| 02 | 1.053 | -2.484 | -0.049 | -2.311 |
| 03 | 1.093 | -1.868 | -0.403 | -1.64 |
| 04 | 0.187 | -0.958 | 0.845 | -2.484 |
| 05 | 1.247 | -1.525 | -1.358 | -3.126 |
| 06 | 0.225 | -1.681 | -0.898 | 0.767 |
| 07 | -0.543 | -2.584 | 1.179 | -2.394 |
| 08 | -1.6 | -2.819 | 1.298 | -2.584 |
| 09 | 0.147 | 0.975 | -2.234 | -2.484 |
| 10 | -0.144 | -1.868 | 0.981 | -1.163 |
| 11 | -0.464 | -1.067 | 1.063 | -2.034 |
| 12 | 0.091 | 0.726 | -0.879 | -0.86 |
| 13 | -0.503 | -0.324 | 0.703 | -0.427 |
| 14 | -0.599 | -0.126 | 0.763 | -0.86 |