Model info
Transcription factorTBP
(GeneCards)
ModelTBP_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusMbATAWAWRS
Best auROC (human)0.868
Best auROC (mouse)0.798
Peak sets in benchmark (human)21
Peak sets in benchmark (mouse)45
Aligned words149
TF familyTBP-related factors {8.1.1}
TF subfamilyTBP {8.1.1.0.1}
HGNCHGNC:11588
EntrezGeneGeneID:6908
(SSTAR profile)
UniProt IDTBP_HUMAN
UniProt ACP20226
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.50991
0.0005 6.21054
0.0001 7.425275
GTEx tissue expression atlas TBP expression
ReMap ChIP-seq dataset list TBP datasets
Motifs in JASPAR
PCM
ACGT
0142.081.023.03.0
027.013.013.0116.0
03121.00.07.021.0
047.07.06.0129.0
05128.09.06.06.0
06106.05.04.034.0
07115.03.029.02.0
0889.01.023.036.0
0959.05.074.011.0
1011.046.085.07.0
PWM
ACGT
010.1160.759-0.462-2.204
02-1.54-0.994-0.9941.114
031.155-3.427-1.54-0.548
04-1.54-1.54-1.671.219
051.211-1.323-1.67-1.67
061.024-1.818-1.992-0.088
071.105-2.204-0.241-2.472
080.852-2.839-0.462-0.033
090.448-1.8180.67-1.145
10-1.1450.2050.807-1.54