Model info
Transcription factorTBR1
ModelTBR1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusvdAGGTGTGAWhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words16871
TF familyTBrain-related factors{6.5.2}
TF subfamilyTBR-1{6.5.2.0.1}
HGNC11590
EntrezGene10716
UniProt IDTBR1_HUMAN
UniProt ACQ16650
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.64261
0.0005 4.87461
0.0001 7.38867
GTEx tissue expression atlas TBR1 expression
ReMap ChIP-seq dataset list TBR1 datasets
Motifs in JASPAR
PCM
ACGT
016642.3492937.1443597.3282533.199
028017.4911144.9083957.4172590.204
0314366.07595.1041007.852240.99
041521.833476.62612855.884855.677
052.68953.76315604.51149.057
06106.177256.788241.9215105.135
07328.94262.16215301.10617.811
08327.715833.906517.10314031.296
09326.944345.86613860.4381176.772
1015166.49194.926217.262231.341
1112320.081932.861651.1341805.944
129250.6952364.6281641.3862453.311
136919.9641925.5512050.5374813.969
PWM
ACGT
010.525-0.29-0.088-0.438
020.713-1.2310.008-0.416
031.296-3.696-1.358-2.782
04-0.947-2.1051.185-1.522
05-6.646-4.2481.379-4.335
06-3.589-2.719-2.7781.347
07-2.473-4.1091.359-5.269
08-2.477-1.547-2.0231.273
09-2.479-2.4231.261-1.204
101.351-3.698-2.884-2.822
111.143-1.436-1.794-0.776
120.856-0.507-0.872-0.47
130.566-0.712-0.6490.203