Model info
| Transcription factor | THRA (GeneCards) | ||||||||
| Model | THA_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dKKhvRnhbvAGGWSMb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 75 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Thyroid hormone receptors (NR1A) {2.1.2.2} | ||||||||
| HGNC | HGNC:11796 | ||||||||
| EntrezGene | GeneID:7067 (SSTAR profile) | ||||||||
| UniProt ID | THA_HUMAN | ||||||||
| UniProt AC | P10827 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | THRA expression | ||||||||
| ReMap ChIP-seq dataset list | THRA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 29.047 | 5.216 | 31.327 | 8.409 |
| 02 | 7.297 | 5.701 | 51.994 | 9.008 |
| 03 | 7.753 | 5.245 | 47.775 | 13.227 |
| 04 | 13.455 | 9.236 | 8.894 | 42.416 |
| 05 | 10.034 | 40.364 | 18.928 | 4.675 |
| 06 | 43.442 | 5.473 | 13.341 | 11.744 |
| 07 | 10.946 | 25.883 | 15.051 | 22.12 |
| 08 | 13.911 | 17.787 | 10.832 | 31.47 |
| 09 | 7.297 | 16.305 | 8.096 | 42.302 |
| 10 | 16.419 | 33.18 | 20.068 | 4.333 |
| 11 | 62.37 | 0.0 | 7.867 | 3.763 |
| 12 | 1.026 | 5.815 | 62.712 | 4.447 |
| 13 | 0.0 | 9.236 | 57.923 | 6.841 |
| 14 | 20.752 | 2.166 | 6.841 | 44.24 |
| 15 | 3.193 | 50.968 | 15.279 | 4.561 |
| 16 | 54.73 | 10.034 | 5.929 | 3.307 |
| 17 | 9.435 | 12.742 | 33.266 | 18.557 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.431 | -1.135 | 0.504 | -0.725 |
| 02 | -0.849 | -1.061 | 0.997 | -0.663 |
| 03 | -0.796 | -1.13 | 0.914 | -0.314 |
| 04 | -0.298 | -0.641 | -0.675 | 0.798 |
| 05 | -0.566 | 0.75 | 0.022 | -1.225 |
| 06 | 0.822 | -1.095 | -0.306 | -0.423 |
| 07 | -0.488 | 0.32 | -0.194 | 0.17 |
| 08 | -0.267 | -0.037 | -0.497 | 0.508 |
| 09 | -0.849 | -0.119 | -0.758 | 0.796 |
| 10 | -0.112 | 0.56 | 0.077 | -1.286 |
| 11 | 1.176 | -2.901 | -0.783 | -1.398 |
| 12 | -2.231 | -1.044 | 1.181 | -1.265 |
| 13 | -2.901 | -0.641 | 1.103 | -0.905 |
| 14 | 0.109 | -1.798 | -0.905 | 0.839 |
| 15 | -1.523 | 0.978 | -0.18 | -1.245 |
| 16 | 1.048 | -0.566 | -1.028 | -1.497 |
| 17 | -0.622 | -0.348 | 0.562 | 0.003 |