Model info
Transcription factorTHRA
ModelTHA_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
C
Motif rank
0
ConsensusdKKhvRnhbvAGGWSMb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words75
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyThyroid hormone receptors (NR1A){2.1.2.2}
HGNC11796
EntrezGene7067
UniProt IDTHA_HUMAN
UniProt ACP10827
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.95291
0.0005 5.65836
0.0001 7.13856
GTEx tissue expression atlas THRA expression
ReMap ChIP-seq dataset list THRA datasets
Motifs in JASPAR
PCM
ACGT
0129.0475.21631.3278.409
027.2975.70151.9949.008
037.7535.24547.77513.227
0413.4559.2368.89442.416
0510.03440.36418.9284.675
0643.4425.47313.34111.744
0710.94625.88315.05122.12
0813.91117.78710.83231.47
097.29716.3058.09642.302
1016.41933.1820.0684.333
1162.370.07.8673.763
121.0265.81562.7124.447
130.09.23657.9236.841
1420.7522.1666.84144.24
153.19350.96815.2794.561
1654.7310.0345.9293.307
179.43512.74233.26618.557
PWM
ACGT
010.431-1.1350.504-0.725
02-0.849-1.0610.997-0.663
03-0.796-1.130.914-0.314
04-0.298-0.641-0.6750.798
05-0.5660.750.022-1.225
060.822-1.095-0.306-0.423
07-0.4880.32-0.1940.17
08-0.267-0.037-0.4970.508
09-0.849-0.119-0.7580.796
10-0.1120.560.077-1.286
111.176-2.901-0.783-1.398
12-2.231-1.0441.181-1.265
13-2.901-0.6411.103-0.905
140.109-1.798-0.9050.839
15-1.5230.978-0.18-1.245
161.048-0.566-1.028-1.497
17-0.622-0.3480.5620.003