Model info
Transcription factorThra
ModelTHA_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
C
Motif rank
0
ConsensusnvRGKKSAnnYvAGGhCAn
Best auROC (human)
Best auROC (mouse)0.9455447247936313
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words505
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyThyroid hormone receptors (NR1A){2.1.2.2}
MGI98742
EntrezGene21833
UniProt IDTHA_MOUSE
UniProt ACP63058
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.222760000000001
0.0005 10.25331
0.0001 14.51296
GTEx tissue expression atlas Thra expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0172.011.077.09.059.024.018.018.030.014.040.05.023.020.067.012.0
0280.011.067.026.047.02.013.07.0102.06.092.02.012.03.028.01.0
0320.07.0206.08.07.04.07.04.028.04.0157.011.01.01.033.01.0
043.02.050.01.00.08.02.06.019.010.0297.077.00.01.021.02.0
052.01.010.09.09.04.00.08.016.041.072.0241.01.021.015.049.0
060.025.02.01.01.060.00.06.07.070.018.02.012.0241.022.032.0
078.07.04.01.0356.015.012.013.028.05.07.02.031.01.06.03.0
0878.0140.086.0119.05.06.01.016.08.04.04.013.00.06.02.011.0
0936.022.027.06.041.043.011.061.016.049.021.07.012.058.033.056.0
104.027.018.056.03.045.00.0124.05.026.015.046.04.038.033.055.0
110.02.011.03.056.038.026.016.04.016.015.031.058.059.0154.010.0
1273.02.043.00.0102.00.012.01.0140.00.066.00.038.02.020.00.0
132.00.0348.03.01.00.03.00.03.00.0138.00.00.00.01.00.0
140.00.06.00.00.00.00.00.017.02.0459.012.00.00.03.00.0
1511.02.01.03.00.00.00.02.0197.068.024.0179.00.03.00.09.0
163.0187.07.011.06.052.01.014.01.021.01.02.06.0150.018.019.0
1713.01.01.01.0362.08.018.022.022.01.03.01.031.04.06.05.0
1867.0136.0141.084.02.07.01.04.05.013.04.06.00.011.06.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.83-1.020.896-1.2130.632-0.258-0.541-0.541-0.038-0.7860.246-1.768-0.3-0.4370.758-0.936
020.934-1.020.758-0.1790.406-2.582-0.858-1.4521.176-1.5981.074-2.582-0.936-2.232-0.106-3.124
03-0.437-1.4521.877-1.326-1.452-1.973-1.452-1.973-0.106-1.9731.606-1.02-3.124-3.1240.056-3.124
04-2.232-2.5820.467-3.124-4.398-1.326-2.582-1.598-0.488-1.1122.2430.896-4.398-3.124-0.39-2.582
05-2.582-3.124-1.112-1.213-1.213-1.973-4.398-1.326-0.6560.2710.832.034-3.124-0.39-0.7190.447
06-4.398-0.218-2.582-3.124-3.1240.648-4.398-1.598-1.4520.802-0.541-2.582-0.9362.034-0.3440.025
07-1.326-1.452-1.973-3.1242.424-0.719-0.936-0.858-0.106-1.768-1.452-2.582-0.006-3.124-1.598-2.232
080.9091.4921.0061.33-1.768-1.598-3.124-0.656-1.326-1.973-1.973-0.858-4.398-1.598-2.582-1.02
090.142-0.344-0.142-1.5980.2710.318-1.020.665-0.6560.447-0.39-1.452-0.9360.6150.0560.58
10-1.973-0.142-0.5410.58-2.2320.363-4.3981.371-1.768-0.179-0.7190.385-1.9730.1950.0560.562
11-4.398-2.582-1.02-2.2320.580.195-0.179-0.656-1.973-0.656-0.719-0.0060.6150.6321.587-1.112
120.843-2.5820.318-4.3981.176-4.398-0.936-3.1241.492-4.3980.743-4.3980.195-2.582-0.437-4.398
13-2.582-4.3982.401-2.232-3.124-4.398-2.232-4.398-2.232-4.3981.478-4.398-4.398-4.398-3.124-4.398
14-4.398-4.398-1.598-4.398-4.398-4.398-4.398-4.398-0.597-2.5822.678-0.936-4.398-4.398-2.232-4.398
15-1.02-2.582-3.124-2.232-4.398-4.398-4.398-2.5821.8330.773-0.2581.737-4.398-2.232-4.398-1.213
16-2.2321.781-1.452-1.02-1.5980.506-3.124-0.786-3.124-0.39-3.124-2.582-1.5981.561-0.541-0.488
17-0.858-3.124-3.124-3.1242.44-1.326-0.541-0.344-0.344-3.124-2.232-3.124-0.006-1.973-1.598-1.768
180.7581.4631.4990.983-2.582-1.452-3.124-1.973-1.768-0.858-1.973-1.598-4.398-1.02-1.598-0.936