Model info
Transcription factorThra
ModelTHA_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusvRGKKYAnnYvAGGhCA
Best auROC (human)
Best auROC (mouse)0.911
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
MGIMGI:98742
EntrezGeneGeneID:21833
(SSTAR profile)
UniProt IDTHA_MOUSE
UniProt ACP63058
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.36786
0.0005 5.36071
0.0001 7.4348600000000005
GTEx tissue expression atlas Thra expression
Motifs in JASPAR
PCM
ACGT
01185.073.0197.045.0
02275.08.0187.030.0
0357.07.0420.016.0
0427.012.0381.080.0
0527.057.092.0324.0
0612.0395.040.053.0
07420.031.017.032.0
0888.0119.0114.0179.0
0995.0188.091.0126.0
1026.0142.035.0297.0
11143.094.0221.042.0
12361.03.0128.08.0
1310.02.0484.04.0
147.09.0464.020.0
15200.074.040.0186.0
1626.0404.026.044.0
17432.015.028.025.0
PWM
ACGT
010.388-0.5290.45-1.0
020.782-2.5840.399-1.389
03-0.771-2.6941.203-1.975
04-1.489-2.2341.106-0.439
05-1.489-0.771-0.3020.945
06-2.2341.142-1.114-0.841
071.203-1.358-1.92-1.328
08-0.346-0.049-0.0910.355
09-0.2710.404-0.3130.008
10-1.5250.126-1.2420.858
110.133-0.2810.565-1.067
121.053-3.3250.023-2.584
13-2.394-3.5731.345-3.126
14-2.694-2.4841.303-1.77
150.465-0.516-1.1140.393
16-1.5251.165-1.525-1.022
171.231-2.034-1.454-1.561