Model info
Transcription factorThra
ModelTHA_MOUSE.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
1
ConsensusYvAGGWCAb
Best auROC (human)
Best auROC (mouse)0.86
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
MGIMGI:98742
EntrezGeneGeneID:21833
(SSTAR profile)
UniProt IDTHA_MOUSE
UniProt ACP63058
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.118295
0.0005 6.21419
0.0001 7.8473299999999995
GTEx tissue expression atlas Thra expression
Motifs in JASPAR
PCM
ACGT
0129.0122.034.0315.0
02144.096.0239.021.0
03381.00.0111.08.0
044.00.0493.03.0
051.07.0490.02.0
06176.055.05.0264.0
0711.0483.04.02.0
08482.012.03.03.0
0971.0175.0171.083.0
PWM
ACGT
01-1.421-0.024-1.270.917
020.14-0.260.642-1.725
031.106-4.4-0.117-2.584
04-3.126-4.41.363-3.325
05-3.903-2.6941.357-3.573
060.339-0.805-2.9610.741
07-2.3111.343-3.126-3.573
081.34-2.234-3.325-3.325
09-0.5560.3330.31-0.403