Model info
| Transcription factor | Thra | ||||||||
| Model | THA_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | YvAGGWCAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.86 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Thyroid hormone receptors (NR1A) {2.1.2.2} | ||||||||
| MGI | MGI:98742 | ||||||||
| EntrezGene | GeneID:21833 (SSTAR profile) | ||||||||
| UniProt ID | THA_MOUSE | ||||||||
| UniProt AC | P63058 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Thra expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 29.0 | 122.0 | 34.0 | 315.0 |
| 02 | 144.0 | 96.0 | 239.0 | 21.0 |
| 03 | 381.0 | 0.0 | 111.0 | 8.0 |
| 04 | 4.0 | 0.0 | 493.0 | 3.0 |
| 05 | 1.0 | 7.0 | 490.0 | 2.0 |
| 06 | 176.0 | 55.0 | 5.0 | 264.0 |
| 07 | 11.0 | 483.0 | 4.0 | 2.0 |
| 08 | 482.0 | 12.0 | 3.0 | 3.0 |
| 09 | 71.0 | 175.0 | 171.0 | 83.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.421 | -0.024 | -1.27 | 0.917 |
| 02 | 0.14 | -0.26 | 0.642 | -1.725 |
| 03 | 1.106 | -4.4 | -0.117 | -2.584 |
| 04 | -3.126 | -4.4 | 1.363 | -3.325 |
| 05 | -3.903 | -2.694 | 1.357 | -3.573 |
| 06 | 0.339 | -0.805 | -2.961 | 0.741 |
| 07 | -2.311 | 1.343 | -3.126 | -3.573 |
| 08 | 1.34 | -2.234 | -3.325 | -3.325 |
| 09 | -0.556 | 0.333 | 0.31 | -0.403 |