Model info
Transcription factorUsf1
ModelUSF1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusvvGTCACGTGnbS
Best auROC (human)0.9975586045339657
Best auROC (mouse)0.9869505306002525
Peak sets in benchmark (human)59
Peak sets in benchmark (mouse)7
Aligned words461
TF familybHLH-ZIP factors{1.2.6}
TF subfamilyUSF factors{1.2.6.2}
MGI99542
EntrezGene22278
UniProt IDUSF1_MOUSE
UniProt ACQ61069
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.74081
0.0005 2.092675
0.0001 4.878080000000001
GTEx tissue expression atlas Usf1 expression
Motifs in JASPAR
PCM
ACGT
0162.0115.0225.058.0
02106.086.0207.061.0
0353.01.0406.00.0
041.07.03.0449.0
050.0460.00.00.0
06460.00.00.00.0
070.0453.02.05.0
0854.05.0401.00.0
091.01.00.0458.0
100.00.0460.00.0
11174.078.0174.034.0
1223.0231.0110.096.0
1331.0255.0132.042.0
PWM
ACGT
01-0.6070.00.665-0.672
02-0.08-0.2860.582-0.622
03-0.759-3.8291.252-4.331
04-3.829-2.614-3.2471.352
05-4.3311.376-4.331-4.331
061.376-4.331-4.331-4.331
07-4.3311.361-3.496-2.881
08-0.741-2.8811.24-4.331
09-3.829-3.829-4.3311.372
10-4.331-4.3311.376-4.331
110.41-0.3820.41-1.188
12-1.5580.691-0.044-0.178
13-1.2760.7890.136-0.985