Model info
Transcription factorVAX1
ModelVAX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length18
Quality
D
Motif rank
0
ConsensusdvTAATTARbvKWAWTWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words50
TF familyNK-related factors{3.1.2}
TF subfamilyVAX{3.1.2.22}
HGNC12660
EntrezGene11023
UniProt IDVAX1_HUMAN
UniProt ACQ5SQQ9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.73541
0.0005 5.75796
0.0001 7.89791
GTEx tissue expression atlas VAX1 expression
ReMap ChIP-seq dataset list VAX1 datasets
Motifs in JASPAR
PCM
ACGT
0117.56.518.57.5
028.016.020.06.0
033.03.03.041.0
0450.00.00.00.0
0550.00.00.00.0
060.00.00.050.0
070.00.00.050.0
0850.00.00.00.0
099.02.036.03.0
101.014.018.017.0
119.015.024.02.0
125.05.011.029.0
1316.08.01.025.0
1440.02.00.08.0
1529.01.00.020.0
169.250.250.2540.25
1714.03.05.028.0
1823.754.757.7513.75
PWM
ACGT
010.316-0.5890.368-0.464
02-0.4060.2310.442-0.658
03-1.22-1.22-1.221.136
041.33-2.623-2.623-2.623
051.33-2.623-2.623-2.623
06-2.623-2.623-2.6231.33
07-2.623-2.623-2.6231.33
081.33-2.623-2.623-2.623
09-0.301-1.511.009-1.22
10-1.9190.1060.3420.288
11-0.3010.170.617-1.51
12-0.813-0.813-0.1180.799
130.231-0.406-1.9190.656
141.112-1.51-2.623-0.406
150.799-1.919-2.6230.442
16-0.276-2.396-2.3961.118
170.106-1.22-0.8130.765
180.607-0.856-0.4350.089