Model info
Transcription factorVAX2
ModelVAX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusdndddvbTAATTARbR
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words51
TF familyNK-related factors{3.1.2}
TF subfamilyVAX{3.1.2.22}
HGNC12661
EntrezGene25806
UniProt IDVAX2_HUMAN
UniProt ACQ9UIW0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.30831
0.0005 6.12491
0.0001 7.79171
GTEx tissue expression atlas VAX2 expression
ReMap ChIP-seq dataset list VAX2 datasets
Motifs in JASPAR
PCM
ACGT
0117.57.59.516.5
0217.758.756.7517.75
0316.254.259.2521.25
0426.753.7510.759.75
0513.05.025.08.0
067.015.025.04.0
077.015.019.010.0
080.07.00.044.0
0939.011.01.00.0
1050.00.00.01.0
110.01.00.050.0
121.00.01.049.0
1348.00.02.01.0
1412.55.532.50.5
154.2511.2510.2525.25
1612.07.029.03.0
PWM
ACGT
010.297-0.482-0.270.241
020.31-0.344-0.5740.31
030.227-0.965-0.2940.482
040.703-1.065-0.157-0.246
050.018-0.8310.638-0.424
06-0.5420.1520.638-1.014
07-0.5420.1520.375-0.223
08-2.637-0.542-2.6371.186
091.069-0.136-1.935-2.637
101.312-2.637-2.637-1.935
11-2.637-1.935-2.6371.312
12-1.935-2.637-1.9351.292
131.272-2.637-1.527-1.935
14-0.018-0.7510.891-2.226
15-0.965-0.116-0.2010.647
16-0.056-0.5420.781-1.238