Model info
| Transcription factor | VDR (GeneCards) | ||||||||
| Model | VDR_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hRRGKTCAb | ||||||||
| Best auROC (human) | 0.877 | ||||||||
| Best auROC (mouse) | 0.821 | ||||||||
| Peak sets in benchmark (human) | 48 | ||||||||
| Peak sets in benchmark (mouse) | 30 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Vitamin D receptor (NR1I) {2.1.2.4} | ||||||||
| HGNC | HGNC:12679 | ||||||||
| EntrezGene | GeneID:7421 (SSTAR profile) | ||||||||
| UniProt ID | VDR_HUMAN | ||||||||
| UniProt AC | P11473 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | VDR expression | ||||||||
| ReMap ChIP-seq dataset list | VDR datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 117.0 | 100.0 | 79.0 | 204.0 |
| 02 | 91.0 | 17.0 | 371.0 | 21.0 |
| 03 | 207.0 | 1.0 | 291.0 | 1.0 |
| 04 | 0.0 | 3.0 | 497.0 | 0.0 |
| 05 | 4.0 | 0.0 | 236.0 | 260.0 |
| 06 | 3.0 | 5.0 | 43.0 | 449.0 |
| 07 | 2.0 | 489.0 | 4.0 | 5.0 |
| 08 | 465.0 | 2.0 | 13.0 | 20.0 |
| 09 | 51.0 | 138.0 | 185.0 | 126.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.065 | -0.22 | -0.452 | 0.485 |
| 02 | -0.313 | -1.92 | 1.08 | -1.725 |
| 03 | 0.5 | -3.903 | 0.838 | -3.903 |
| 04 | -4.4 | -3.325 | 1.371 | -4.4 |
| 05 | -3.126 | -4.4 | 0.63 | 0.726 |
| 06 | -3.325 | -2.961 | -1.044 | 1.27 |
| 07 | -3.573 | 1.355 | -3.126 | -2.961 |
| 08 | 1.305 | -3.573 | -2.163 | -1.77 |
| 09 | -0.879 | 0.098 | 0.388 | 0.008 |