Model info
Transcription factorVDR
ModelVDR_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensushRRGKTCAb
Best auROC (human)0.8772214403557773
Best auROC (mouse)0.8208361742084197
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
HGNC12679
EntrezGene7421
UniProt IDVDR_HUMAN
UniProt ACP11473
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.171985
0.0005 6.153314999999999
0.0001 7.8810649999999995
GTEx tissue expression atlas VDR expression
ReMap ChIP-seq dataset list VDR datasets
Motifs in JASPAR
PCM
ACGT
01117.0100.079.0204.0
0291.017.0371.021.0
03207.01.0291.01.0
040.03.0497.00.0
054.00.0236.0260.0
063.05.043.0449.0
072.0489.04.05.0
08465.02.013.020.0
0951.0138.0185.0126.0
PWM
ACGT
01-0.065-0.22-0.4520.485
02-0.313-1.921.08-1.725
030.5-3.9030.838-3.903
04-4.4-3.3251.371-4.4
05-3.126-4.40.630.726
06-3.325-2.961-1.0441.27
07-3.5731.355-3.126-2.961
081.305-3.573-2.163-1.77
09-0.8790.0980.3880.008