Model info
Transcription factorVdr
ModelVDR_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensushRRGKTCAb
Best auROC (human)0.8772214403557773
Best auROC (mouse)0.8208361742084197
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
MGI103076
EntrezGene22337
UniProt IDVDR_MOUSE
UniProt ACP48281
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.252555
0.0005 6.283295
0.0001 7.912395
GTEx tissue expression atlas Vdr expression
Motifs in JASPAR
PCM
ACGT
01117.0100.079.0204.0
0291.017.0371.021.0
03207.01.0291.01.0
040.03.0497.00.0
054.00.0236.0260.0
063.05.043.0449.0
072.0489.04.05.0
08465.02.013.020.0
0951.0138.0185.0126.0
PWM
ACGT
01-0.065-0.22-0.4520.485
02-0.313-1.921.08-1.725
030.5-3.9030.838-3.903
04-4.4-3.3251.371-4.4
05-3.126-4.40.630.726
06-3.325-2.961-1.0441.27
07-3.5731.355-3.126-2.961
081.305-3.573-2.163-1.77
09-0.8790.0980.3880.008