Model info
Transcription factorVSX1
ModelVSX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusTAATTARhhhhhhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6598
TF familyPaired-related HD factors{3.1.3}
TF subfamilyVSX{3.1.3.28}
HGNC12723
EntrezGene30813
UniProt IDVSX1_HUMAN
UniProt ACQ9NZR4
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.35886
0.0005 6.32201
0.0001 8.409415
GTEx tissue expression atlas VSX1 expression
ReMap ChIP-seq dataset list VSX1 datasets
Motifs in JASPAR
PCM
ACGT
01172.076208.051118.4995969.373
026205.83989.59594.83877.729
036276.57360.43972.88258.106
0444.32859.7877.6676286.225
0532.64945.39388.2396301.719
064971.96992.6371355.86247.532
071629.972916.253740.676181.102
081036.6823664.984761.2651005.069
091397.2821784.369720.1592566.189
102635.6541104.75519.5752208.022
112911.869776.207489.522290.405
122261.829663.274443.2013099.697
132691.274623.034386.4842767.209
142566.365581.693681.7012638.241
PWM
ACGT
01-2.229-2.041-2.5961.305
021.344-2.87-2.815-3.009
031.355-3.252-3.071-3.29
04-3.55-3.263-3.0091.357
05-3.839-3.527-2.8851.359
061.122-2.838-0.176-3.483
070.008-0.5670.838-2.179
08-0.4440.817-0.752-0.475
09-0.1460.098-0.8070.461
100.488-0.38-1.1320.311
110.588-0.732-1.1920.348
120.335-0.889-1.2910.65
130.509-0.952-1.4270.537
140.461-1.02-0.8620.489