Model info
Transcription factorVsx2
ModelVSX2_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensushTAATTAGCYdn
Best auROC (human)
Best auROC (mouse)0.996
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words504
TF familyPaired-related HD factors {3.1.3}
TF subfamilyVSX {3.1.3.28}
MGIMGI:88401
EntrezGeneGeneID:12677
(SSTAR profile)
UniProt IDVSX2_MOUSE
UniProt ACQ61412
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.06689
0.0005 3.099745
0.0001 6.7408
GTEx tissue expression atlas Vsx2 expression
Motifs in JASPAR
PCM
ACGT
0160.0194.041.0205.0
027.02.02.0489.0
03489.05.04.02.0
04498.02.00.00.0
050.00.02.0498.0
060.01.00.0499.0
07496.00.04.00.0
087.04.0489.00.0
090.0497.01.02.0
1016.0181.01.0302.0
11108.074.080.0238.0
12159.0170.095.076.0
PWM
ACGT
01-0.7210.435-1.090.49
02-2.694-3.573-3.5731.355
031.355-2.961-3.126-3.573
041.373-3.573-4.4-4.4
05-4.4-4.4-3.5731.373
06-4.4-3.903-4.41.375
071.369-4.4-3.126-4.4
08-2.694-3.1261.355-4.4
09-4.41.371-3.903-3.573
10-1.9750.366-3.9030.875
11-0.144-0.516-0.4390.638
120.2380.304-0.271-0.49