Model info
Transcription factorZBED1
ModelZBED1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusYATGTCGCGATAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4698
TF familyBED zinc finger factors{2.3.5}
TF subfamilyZBED1 (ALTE, DREF, TRAMP){2.3.5.0.1}
HGNC447
EntrezGene9189
UniProt IDZBED1_HUMAN
UniProt ACO96006
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -8.627334999999999
0.0005 -6.8390249999999995
0.0001 -2.733245
GTEx tissue expression atlas ZBED1 expression
ReMap ChIP-seq dataset list ZBED1 datasets
Motifs in JASPAR
PCM
ACGT
01198.01438.093.02676.0
024297.556.539.511.5
031.50.50.54402.5
041392.00.03013.00.0
050.01.00.04404.0
060.04405.00.00.0
070.00.04405.00.0
080.04287.01.0117.0
090.00.04405.00.0
104405.00.00.00.0
1110.01601.010.02784.0
124329.7514.7513.7546.75
13257.5545.51358.52243.5
PWM
ACGT
01-1.7070.266-2.4510.887
021.36-2.935-3.278-4.396
03-5.726-6.052-6.0521.384
040.234-6.2651.005-6.265
05-6.265-5.875-6.2651.385
06-6.2651.385-6.265-6.265
07-6.265-6.2651.385-6.265
08-6.2651.358-5.875-2.226
09-6.265-6.2651.385-6.265
101.385-6.265-6.265-6.265
11-4.5130.374-4.5130.926
121.368-4.182-4.243-3.117
13-1.447-0.7010.210.711