Transcription factor | Zic2 | ||||||||
Model | ZIC2_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 17 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | ndRhhhCCTGCTGdGhn | ||||||||
Best auROC (human) | 0.511 | ||||||||
Best auROC (mouse) | 0.987 | ||||||||
Peak sets in benchmark (human) | 4 | ||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 508 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
MGI | MGI:106679 | ||||||||
EntrezGene | |||||||||
UniProt ID | ZIC2_MOUSE | ||||||||
UniProt AC | Q62520 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Zic2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 24.0 | 9.0 | 86.0 | 9.0 | 35.0 | 25.0 | 19.0 | 101.0 | 26.0 | 13.0 | 38.0 | 9.0 | 12.0 | 13.0 | 51.0 | 30.0 |
02 | 18.0 | 14.0 | 62.0 | 3.0 | 27.0 | 17.0 | 7.0 | 9.0 | 47.0 | 26.0 | 113.0 | 8.0 | 18.0 | 8.0 | 119.0 | 4.0 |
03 | 15.0 | 50.0 | 23.0 | 22.0 | 13.0 | 36.0 | 4.0 | 12.0 | 56.0 | 188.0 | 28.0 | 29.0 | 1.0 | 12.0 | 8.0 | 3.0 |
04 | 14.0 | 47.0 | 6.0 | 18.0 | 22.0 | 117.0 | 9.0 | 138.0 | 7.0 | 40.0 | 3.0 | 13.0 | 5.0 | 36.0 | 10.0 | 15.0 |
05 | 6.0 | 25.0 | 6.0 | 11.0 | 65.0 | 88.0 | 7.0 | 80.0 | 1.0 | 16.0 | 0.0 | 11.0 | 72.0 | 60.0 | 20.0 | 32.0 |
06 | 1.0 | 143.0 | 0.0 | 0.0 | 1.0 | 188.0 | 0.0 | 0.0 | 0.0 | 33.0 | 0.0 | 0.0 | 0.0 | 133.0 | 1.0 | 0.0 |
07 | 0.0 | 2.0 | 0.0 | 0.0 | 24.0 | 462.0 | 1.0 | 10.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
08 | 3.0 | 1.0 | 0.0 | 20.0 | 17.0 | 84.0 | 0.0 | 364.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 10.0 |
09 | 3.0 | 0.0 | 17.0 | 0.0 | 23.0 | 4.0 | 54.0 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 | 15.0 | 5.0 | 374.0 | 1.0 |
10 | 0.0 | 38.0 | 3.0 | 0.0 | 0.0 | 7.0 | 0.0 | 2.0 | 1.0 | 388.0 | 38.0 | 18.0 | 0.0 | 3.0 | 2.0 | 0.0 |
11 | 0.0 | 0.0 | 0.0 | 1.0 | 30.0 | 2.0 | 11.0 | 393.0 | 12.0 | 1.0 | 12.0 | 18.0 | 0.0 | 0.0 | 13.0 | 7.0 |
12 | 1.0 | 0.0 | 40.0 | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 36.0 | 0.0 | 2.0 | 0.0 | 416.0 | 1.0 |
13 | 2.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 205.0 | 44.0 | 97.0 | 148.0 | 2.0 | 0.0 | 0.0 | 0.0 |
14 | 0.0 | 11.0 | 187.0 | 11.0 | 3.0 | 5.0 | 17.0 | 19.0 | 0.0 | 12.0 | 78.0 | 9.0 | 1.0 | 5.0 | 112.0 | 30.0 |
15 | 0.0 | 4.0 | 0.0 | 0.0 | 11.0 | 5.0 | 0.0 | 17.0 | 177.0 | 109.0 | 30.0 | 78.0 | 18.0 | 25.0 | 4.0 | 22.0 |
16 | 41.0 | 36.0 | 102.0 | 27.0 | 36.0 | 39.0 | 16.0 | 52.0 | 4.0 | 9.0 | 9.0 | 12.0 | 13.0 | 27.0 | 33.0 | 44.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.26 | -1.215 | 1.004 | -1.215 | 0.112 | -0.22 | -0.49 | 1.165 | -0.181 | -0.86 | 0.193 | -1.215 | -0.938 | -0.86 | 0.485 | -0.04 |
02 | -0.543 | -0.788 | 0.679 | -2.234 | -0.144 | -0.599 | -1.454 | -1.215 | 0.404 | -0.181 | 1.276 | -1.328 | -0.543 | -1.328 | 1.328 | -1.975 |
03 | -0.721 | 0.465 | -0.302 | -0.346 | -0.86 | 0.14 | -1.975 | -0.938 | 0.578 | 1.784 | -0.108 | -0.074 | -3.126 | -0.938 | -1.328 | -2.234 |
04 | -0.788 | 0.404 | -1.6 | -0.543 | -0.346 | 1.311 | -1.215 | 1.476 | -1.454 | 0.244 | -2.234 | -0.86 | -1.77 | 0.14 | -1.114 | -0.721 |
05 | -1.6 | -0.22 | -1.6 | -1.022 | 0.726 | 1.027 | -1.454 | 0.932 | -3.126 | -0.658 | -4.4 | -1.022 | 0.828 | 0.646 | -0.439 | 0.023 |
06 | -3.126 | 1.511 | -4.4 | -4.4 | -3.126 | 1.784 | -4.4 | -4.4 | -4.4 | 0.054 | -4.4 | -4.4 | -4.4 | 1.439 | -3.126 | -4.4 |
07 | -4.4 | -2.584 | -4.4 | -4.4 | -0.26 | 2.682 | -3.126 | -1.114 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
08 | -2.234 | -3.126 | -4.4 | -0.439 | -0.599 | 0.981 | -4.4 | 2.444 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -1.114 |
09 | -2.234 | -4.4 | -0.599 | -4.4 | -0.302 | -1.975 | 0.542 | -1.975 | -4.4 | -4.4 | -4.4 | -4.4 | -0.721 | -1.77 | 2.471 | -3.126 |
10 | -4.4 | 0.193 | -2.234 | -4.4 | -4.4 | -1.454 | -4.4 | -2.584 | -3.126 | 2.508 | 0.193 | -0.543 | -4.4 | -2.234 | -2.584 | -4.4 |
11 | -4.4 | -4.4 | -4.4 | -3.126 | -0.04 | -2.584 | -1.022 | 2.52 | -0.938 | -3.126 | -0.938 | -0.543 | -4.4 | -4.4 | -0.86 | -1.454 |
12 | -3.126 | -4.4 | 0.244 | -3.126 | -3.126 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | 0.14 | -4.4 | -2.584 | -4.4 | 2.577 | -3.126 |
13 | -2.584 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 1.871 | 0.339 | 1.124 | 1.545 | -2.584 | -4.4 | -4.4 | -4.4 |
14 | -4.4 | -1.022 | 1.779 | -1.022 | -2.234 | -1.77 | -0.599 | -0.49 | -4.4 | -0.938 | 0.907 | -1.215 | -3.126 | -1.77 | 1.268 | -0.04 |
15 | -4.4 | -1.975 | -4.4 | -4.4 | -1.022 | -1.77 | -4.4 | -0.599 | 1.724 | 1.241 | -0.04 | 0.907 | -0.543 | -0.22 | -1.975 | -0.346 |
16 | 0.269 | 0.14 | 1.174 | -0.144 | 0.14 | 0.219 | -0.658 | 0.504 | -1.975 | -1.215 | -1.215 | -0.938 | -0.86 | -0.144 | 0.054 | 0.339 |