Model info
Transcription factorZic2
ModelZIC2_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensusdRvYnCCTGCTGdGh
Best auROC (human)0.5021352735086537
Best auROC (mouse)0.9800915534801257
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)4
Aligned words500
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyGLI-like factors{2.3.3.1}
MGI106679
EntrezGene
UniProt IDZIC2_MOUSE
UniProt ACQ62520
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.7780099999999996
0.0005 4.85366
0.0001 7.08091
GTEx tissue expression atlas Zic2 expression
Motifs in JASPAR
PCM
ACGT
0196.063.0191.0150.0
02110.072.0298.020.0
0379.0301.061.059.0
0448.0241.027.0184.0
05137.0193.033.0137.0
062.0494.01.03.0
0728.0460.01.011.0
0823.082.01.0394.0
0932.08.0454.06.0
102.0434.039.025.0
1146.010.034.0410.0
125.00.0492.03.0
13207.043.0103.0147.0
144.034.0397.065.0
15210.0142.038.0110.0
PWM
ACGT
01-0.26-0.6730.420.18
02-0.126-0.5430.862-1.77
03-0.4520.872-0.705-0.737
04-0.9380.651-1.4890.383
050.0910.43-1.2980.091
06-3.5731.365-3.903-3.325
07-1.4541.294-3.903-2.311
08-1.64-0.415-3.9031.14
09-1.328-2.5841.281-2.819
10-3.5731.236-1.138-1.561
11-0.979-2.394-1.271.179
12-2.961-4.41.361-3.325
130.5-1.044-0.1910.16
14-3.126-1.271.147-0.643
150.5140.126-1.163-0.126