Model info
| Transcription factor | ZIC3 (GeneCards) | ||||||||
| Model | ZIC3_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvvbhCCTGCTGdGn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.943 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 170 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:12874 | ||||||||
| EntrezGene | GeneID:7547 (SSTAR profile) | ||||||||
| UniProt ID | ZIC3_HUMAN | ||||||||
| UniProt AC | O60481 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZIC3 expression | ||||||||
| ReMap ChIP-seq dataset list | ZIC3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 28.0 | 26.0 | 77.0 | 38.0 |
| 02 | 28.0 | 39.0 | 90.0 | 12.0 |
| 03 | 37.0 | 84.0 | 27.0 | 21.0 |
| 04 | 17.0 | 78.0 | 21.0 | 53.0 |
| 05 | 37.0 | 64.0 | 16.0 | 52.0 |
| 06 | 0.0 | 168.0 | 1.0 | 0.0 |
| 07 | 14.0 | 153.0 | 0.0 | 2.0 |
| 08 | 10.0 | 22.0 | 0.0 | 137.0 |
| 09 | 8.0 | 10.0 | 148.0 | 3.0 |
| 10 | 0.0 | 155.0 | 14.0 | 0.0 |
| 11 | 8.0 | 1.0 | 2.0 | 158.0 |
| 12 | 2.0 | 5.0 | 162.0 | 0.0 |
| 13 | 55.0 | 5.0 | 34.0 | 75.0 |
| 14 | 1.0 | 5.0 | 148.0 | 15.0 |
| 15 | 63.0 | 43.0 | 24.0 | 39.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.397 | -0.467 | 0.587 | -0.103 |
| 02 | -0.397 | -0.078 | 0.74 | -1.187 |
| 03 | -0.129 | 0.672 | -0.431 | -0.67 |
| 04 | -0.868 | 0.6 | -0.67 | 0.221 |
| 05 | -0.129 | 0.405 | -0.924 | 0.202 |
| 06 | -3.525 | 1.358 | -2.948 | -3.525 |
| 07 | -1.047 | 1.265 | -3.525 | -2.585 |
| 08 | -1.35 | -0.626 | -3.525 | 1.156 |
| 09 | -1.545 | -1.35 | 1.232 | -2.319 |
| 10 | -3.525 | 1.278 | -1.047 | -3.525 |
| 11 | -1.545 | -2.948 | -2.585 | 1.297 |
| 12 | -2.585 | -1.936 | 1.322 | -3.525 |
| 13 | 0.257 | -1.936 | -0.21 | 0.561 |
| 14 | -2.948 | -1.936 | 1.232 | -0.983 |
| 15 | 0.39 | 0.017 | -0.543 | -0.078 |