Model info
| Transcription factor | Zkscan1 | ||||||||
| Model | ZKSC1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvhdbhCCTACTRWGYGYh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.961 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF24-like factors {2.3.3.10} | ||||||||
| MGI | MGI:1921820 | ||||||||
| EntrezGene | GeneID:74570 (SSTAR profile) | ||||||||
| UniProt ID | ZKSC1_MOUSE | ||||||||
| UniProt AC | Q8BGS3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Zkscan1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 137.0 | 62.0 | 77.0 | 224.0 |
| 02 | 118.0 | 70.0 | 259.0 | 53.0 |
| 03 | 218.0 | 111.0 | 51.0 | 120.0 |
| 04 | 154.0 | 50.0 | 229.0 | 67.0 |
| 05 | 55.0 | 142.0 | 212.0 | 91.0 |
| 06 | 209.0 | 116.0 | 86.0 | 89.0 |
| 07 | 14.0 | 467.0 | 11.0 | 8.0 |
| 08 | 27.0 | 440.0 | 2.0 | 31.0 |
| 09 | 2.0 | 88.0 | 24.0 | 386.0 |
| 10 | 459.0 | 19.0 | 11.0 | 11.0 |
| 11 | 9.0 | 463.0 | 21.0 | 7.0 |
| 12 | 19.0 | 11.0 | 3.0 | 467.0 |
| 13 | 191.0 | 17.0 | 288.0 | 4.0 |
| 14 | 67.0 | 25.0 | 50.0 | 358.0 |
| 15 | 0.0 | 19.0 | 473.0 | 8.0 |
| 16 | 11.0 | 71.0 | 30.0 | 388.0 |
| 17 | 32.0 | 22.0 | 410.0 | 36.0 |
| 18 | 48.0 | 342.0 | 37.0 | 73.0 |
| 19 | 118.0 | 180.0 | 45.0 | 157.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.091 | -0.689 | -0.477 | 0.578 |
| 02 | -0.057 | -0.57 | 0.722 | -0.841 |
| 03 | 0.551 | -0.117 | -0.879 | -0.04 |
| 04 | 0.206 | -0.898 | 0.6 | -0.613 |
| 05 | -0.805 | 0.126 | 0.523 | -0.313 |
| 06 | 0.509 | -0.074 | -0.368 | -0.335 |
| 07 | -2.096 | 1.309 | -2.311 | -2.584 |
| 08 | -1.489 | 1.25 | -3.573 | -1.358 |
| 09 | -3.573 | -0.346 | -1.6 | 1.119 |
| 10 | 1.292 | -1.818 | -2.311 | -2.311 |
| 11 | -2.484 | 1.3 | -1.725 | -2.694 |
| 12 | -1.818 | -2.311 | -3.325 | 1.309 |
| 13 | 0.42 | -1.92 | 0.828 | -3.126 |
| 14 | -0.613 | -1.561 | -0.898 | 1.044 |
| 15 | -4.4 | -1.818 | 1.322 | -2.584 |
| 16 | -2.311 | -0.556 | -1.389 | 1.124 |
| 17 | -1.328 | -1.681 | 1.179 | -1.215 |
| 18 | -0.938 | 0.999 | -1.189 | -0.529 |
| 19 | -0.057 | 0.361 | -1.0 | 0.225 |