Model info
Transcription factorZNF554
ModelZN554_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
C
Motif rank
0
ConsensusRCdGRGYCRnbbRRdddvYh
Best auROC (human)0.8530480720214415
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words501
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyunclassified{2.3.3.0}
HGNC26629
EntrezGene115196
UniProt IDZN554_HUMAN
UniProt ACQ86TJ5
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.25101
0.0005 5.16471
0.0001 7.03551
GTEx tissue expression atlas ZNF554 expression
ReMap ChIP-seq dataset list ZNF554 datasets
Motifs in JASPAR
PCM
ACGT
01120.047.0300.033.0
0230.0412.03.055.0
03172.057.077.0194.0
0422.032.0423.023.0
05343.05.0142.010.0
0671.019.0408.02.0
078.0285.023.0184.0
080.0493.00.07.0
09389.030.045.036.0
1087.0136.0120.0157.0
1189.0101.0216.094.0
1260.080.084.0276.0
13207.020.0218.055.0
1470.059.0351.020.0
15109.049.0188.0154.0
1669.060.0228.0143.0
1780.062.0137.0221.0
18191.053.0212.044.0
1963.0327.045.065.0
2092.077.072.0259.0
PWM
ACGT
01-0.04-0.9580.868-1.298
02-1.3891.184-3.325-0.805
030.316-0.771-0.4770.435
04-1.681-1.3281.21-1.64
051.002-2.9610.126-2.394
06-0.556-1.8181.174-3.573
07-2.5840.817-1.640.383
08-4.41.363-4.4-2.694
091.127-1.389-1.0-1.215
10-0.3570.083-0.040.225
11-0.335-0.210.542-0.281
12-0.721-0.439-0.3920.785
130.5-1.770.551-0.805
14-0.57-0.7371.025-1.77
15-0.135-0.9180.4040.206
16-0.584-0.7210.5950.133
17-0.439-0.6890.0910.565
180.42-0.8410.523-1.022
19-0.6730.954-1.0-0.643
20-0.302-0.477-0.5430.722