Model info
Transcription factorZNF554
ModelZN554_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
D
Motif rank
1
ConsensusRCWGAGYCM
Best auROC (human)0.7741928079040351
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words500
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyunclassified{2.3.3.0}
HGNC26629
EntrezGene115196
UniProt IDZN554_HUMAN
UniProt ACQ86TJ5
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.80311
0.0005 5.719335000000001
0.0001 7.496535
GTEx tissue expression atlas ZNF554 expression
ReMap ChIP-seq dataset list ZNF554 datasets
Motifs in JASPAR
PCM
ACGT
01105.2558.25306.2530.25
0232.25451.2515.251.25
03235.2527.2524.25213.25
0410.2517.25466.256.25
05419.253.2574.253.25
0618.2515.25463.253.25
075.25305.2534.25155.25
0812.0484.01.03.0
09356.061.030.053.0
PWM
ACGT
01-0.17-0.750.889-1.381
02-1.321.275-2.019-3.81
030.627-1.48-1.590.529
04-2.372-1.9071.307-2.786
051.201-3.271-0.513-3.271
06-1.855-2.0191.301-3.271
07-2.9230.886-1.2630.214
08-2.2341.345-3.903-3.325
091.039-0.705-1.389-0.841