Model info
| Transcription factor | ARID5B (GeneCards) | ||||||||
| Model | ARI5B_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nbYKnRTATTSKd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 19 | ||||||||
| TF family | ARID-related factors {3.7.1} | ||||||||
| TF subfamily | ARID5 {3.7.1.5} | ||||||||
| HGNC | HGNC:17362 | ||||||||
| EntrezGene | GeneID:84159 (SSTAR profile) | ||||||||
| UniProt ID | ARI5B_HUMAN | ||||||||
| UniProt AC | Q14865 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ARID5B expression | ||||||||
| ReMap ChIP-seq dataset list | ARID5B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.25 | 1.25 | 5.25 | 5.25 |
| 02 | 2.0 | 4.0 | 6.0 | 3.0 |
| 03 | 0.0 | 4.0 | 3.0 | 8.0 |
| 04 | 0.0 | 2.0 | 5.0 | 8.0 |
| 05 | 5.0 | 1.0 | 5.0 | 4.0 |
| 06 | 3.0 | 1.0 | 10.0 | 1.0 |
| 07 | 0.0 | 0.0 | 0.0 | 15.0 |
| 08 | 13.0 | 0.0 | 2.0 | 0.0 |
| 09 | 0.0 | 2.0 | 0.0 | 13.0 |
| 10 | 0.0 | 1.0 | 1.0 | 13.0 |
| 11 | 2.0 | 4.0 | 8.0 | 1.0 |
| 12 | 2.0 | 1.0 | 4.0 | 8.0 |
| 13 | 3.75 | 1.75 | 6.75 | 2.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.12 | -0.832 | 0.292 | 0.292 |
| 02 | -0.503 | 0.055 | 0.411 | -0.186 |
| 03 | -1.878 | 0.055 | -0.186 | 0.673 |
| 04 | -1.878 | -0.503 | 0.249 | 0.673 |
| 05 | 0.249 | -0.971 | 0.249 | 0.055 |
| 06 | -0.186 | -0.971 | 0.88 | -0.971 |
| 07 | -1.878 | -1.878 | -1.878 | 1.264 |
| 08 | 1.128 | -1.878 | -0.503 | -1.878 |
| 09 | -1.878 | -0.503 | -1.878 | 1.128 |
| 10 | -1.878 | -0.971 | -0.971 | 1.128 |
| 11 | -0.503 | 0.055 | 0.673 | -0.971 |
| 12 | -0.503 | -0.971 | 0.055 | 0.673 |
| 13 | 0.0 | -0.601 | 0.517 | -0.256 |