Check the newest release v12
Model info
Transcription factorARNT
(GeneCards)
ModelARNT_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusnbnvdRCGTGMb
Best auROC (human)0.952
Best auROC (mouse)
Peak sets in benchmark (human)8
Peak sets in benchmark (mouse)
Aligned words512
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:700
EntrezGeneGeneID:405
(SSTAR profile)
UniProt IDARNT_HUMAN
UniProt ACP27540
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.989369999999999
0.0005 6.6414349999999995
0.0001 10.746725
GTEx tissue expression atlas ARNT expression
ReMap ChIP-seq dataset list ARNT datasets
Motifs in JASPAR
MA0004.1 (Arnt; Mus musculus)
MA0006.1 (Ahr::Arnt; Mus musculus)
MA0259.1 (ARNT::HIF1A; Mus musculus/Rattus rattus/Homo sapiens/Oryctolagus cuniculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.013.038.016.016.021.038.037.027.029.084.040.06.012.092.018.0
0213.011.023.015.023.013.018.021.046.082.068.056.013.06.082.010.0
0321.019.039.016.014.044.033.021.040.068.071.012.010.011.070.011.0
0423.09.031.022.016.010.09.0107.023.014.065.0111.015.05.09.031.0
0556.00.018.03.026.04.07.01.099.06.08.01.0180.09.077.05.0
066.0348.01.06.00.017.00.02.00.0108.00.02.00.010.00.00.0
070.00.06.00.02.01.0480.00.00.00.01.00.00.00.010.00.0
080.00.00.02.00.00.00.01.00.00.00.0497.00.00.00.00.0
090.00.00.00.00.00.00.00.00.00.00.00.00.01.0498.01.0
100.00.00.00.00.00.00.01.0172.0254.019.053.01.00.00.00.0
118.0116.032.017.063.084.038.069.04.02.011.02.03.016.023.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.86-0.860.193-0.658-0.658-0.3920.1930.167-0.144-0.0740.9810.244-1.6-0.9381.072-0.543
02-0.86-1.022-0.302-0.721-0.302-0.86-0.543-0.3920.3830.9570.7710.578-0.86-1.60.957-1.114
03-0.392-0.490.219-0.658-0.7880.3390.054-0.3920.2440.7710.814-0.938-1.114-1.0220.8-1.022
04-0.302-1.215-0.008-0.346-0.658-1.114-1.2151.222-0.302-0.7880.7261.259-0.721-1.77-1.215-0.008
050.578-4.4-0.543-2.234-0.181-1.975-1.454-3.1261.145-1.6-1.328-3.1261.741-1.2150.894-1.77
06-1.62.399-3.126-1.6-4.4-0.599-4.4-2.584-4.41.231-4.4-2.584-4.4-1.114-4.4-4.4
07-4.4-4.4-1.6-4.4-2.584-3.1262.72-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.114-4.4
08-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.42.755-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1262.757-3.126
10-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1261.6952.084-0.490.523-3.126-4.4-4.4-4.4
11-1.3281.3030.023-0.5990.6950.9810.1930.785-1.975-2.584-1.022-2.584-2.234-0.658-0.302-0.938