Model info
| Transcription factor | ARNT (GeneCards) | ||||||||
| Model | ARNT_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRCGTGMh | ||||||||
| Best auROC (human) | 0.936 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 8 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | PAS domain factors {1.2.5} | ||||||||
| TF subfamily | Arnt-like factors {1.2.5.2} | ||||||||
| HGNC | HGNC:700 | ||||||||
| EntrezGene | GeneID:405 (SSTAR profile) | ||||||||
| UniProt ID | ARNT_HUMAN | ||||||||
| UniProt AC | P27540 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ARNT expression | ||||||||
| ReMap ChIP-seq dataset list | ARNT datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 76.0 | 142.0 | 215.0 | 67.0 |
| 02 | 69.0 | 37.0 | 121.0 | 273.0 |
| 03 | 351.0 | 15.0 | 123.0 | 11.0 |
| 04 | 5.0 | 474.0 | 1.0 | 20.0 |
| 05 | 3.0 | 1.0 | 495.0 | 1.0 |
| 06 | 0.0 | 0.0 | 1.0 | 499.0 |
| 07 | 0.0 | 3.0 | 496.0 | 1.0 |
| 08 | 178.0 | 263.0 | 12.0 | 47.0 |
| 09 | 77.0 | 251.0 | 72.0 | 100.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.49 | 0.126 | 0.537 | -0.613 |
| 02 | -0.584 | -1.189 | -0.032 | 0.774 |
| 03 | 1.025 | -2.034 | -0.016 | -2.311 |
| 04 | -2.961 | 1.324 | -3.903 | -1.77 |
| 05 | -3.325 | -3.903 | 1.367 | -3.903 |
| 06 | -4.4 | -4.4 | -3.903 | 1.375 |
| 07 | -4.4 | -3.325 | 1.369 | -3.903 |
| 08 | 0.35 | 0.737 | -2.234 | -0.958 |
| 09 | -0.477 | 0.691 | -0.543 | -0.22 |