Model info
| Transcription factor | Arnt | ||||||||
| Model | ARNT_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYACGTGh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 283 | ||||||||
| TF family | PAS domain factors {1.2.5} | ||||||||
| TF subfamily | Arnt-like factors {1.2.5.2} | ||||||||
| MGI | MGI:88071 | ||||||||
| EntrezGene | GeneID:11863 (SSTAR profile) | ||||||||
| UniProt ID | ARNT_MOUSE | ||||||||
| UniProt AC | P53762 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Arnt expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 27.551 | 66.002 | 63.374 | 110.872 |
| 02 | 12.601 | 139.091 | 16.5 | 99.607 |
| 03 | 145.565 | 0.0 | 122.233 | 0.0 |
| 04 | 0.0 | 267.798 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 267.798 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 267.798 |
| 07 | 0.0 | 0.0 | 267.798 | 0.0 |
| 08 | 50.292 | 148.117 | 14.296 | 55.093 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.859 | -0.014 | -0.054 | 0.496 |
| 02 | -1.586 | 0.721 | -1.34 | 0.391 |
| 03 | 0.766 | -3.89 | 0.593 | -3.89 |
| 04 | -3.89 | 1.371 | -3.89 | -3.89 |
| 05 | -3.89 | -3.89 | 1.371 | -3.89 |
| 06 | -3.89 | -3.89 | -3.89 | 1.371 |
| 07 | -3.89 | -3.89 | 1.371 | -3.89 |
| 08 | -0.279 | 0.783 | -1.471 | -0.191 |