Model info
| Transcription factor | T | ||||||||
| Model | BRAC_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 25 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dKKhvCWbhdddSTGTSWRdKhnKb | ||||||||
| Best auROC (human) | 0.704 | ||||||||
| Best auROC (mouse) | 0.814 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 435 | ||||||||
| TF family | Brachyury-related factors {6.5.1} | ||||||||
| TF subfamily | T (Brachyury) {6.5.1.0.1} | ||||||||
| MGI | MGI:98472 | ||||||||
| EntrezGene | GeneID:20997 (SSTAR profile) | ||||||||
| UniProt ID | BRAC_MOUSE | ||||||||
| UniProt AC | P20293 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | T expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 77.0 | 67.0 | 84.0 | 207.0 |
| 02 | 38.0 | 30.0 | 48.0 | 319.0 |
| 03 | 17.0 | 16.0 | 150.0 | 252.0 |
| 04 | 122.0 | 79.0 | 62.0 | 172.0 |
| 05 | 92.0 | 153.0 | 149.0 | 41.0 |
| 06 | 12.0 | 369.0 | 17.0 | 37.0 |
| 07 | 327.0 | 26.0 | 18.0 | 64.0 |
| 08 | 47.0 | 151.0 | 71.0 | 166.0 |
| 09 | 169.0 | 104.0 | 44.0 | 118.0 |
| 10 | 123.0 | 43.0 | 60.0 | 209.0 |
| 11 | 111.0 | 50.0 | 222.0 | 52.0 |
| 12 | 88.0 | 74.0 | 84.0 | 189.0 |
| 13 | 20.0 | 219.0 | 171.0 | 25.0 |
| 14 | 7.0 | 8.0 | 1.0 | 419.0 |
| 15 | 6.0 | 21.0 | 399.0 | 9.0 |
| 16 | 32.0 | 40.0 | 10.0 | 353.0 |
| 17 | 10.0 | 186.0 | 175.0 | 64.0 |
| 18 | 342.0 | 18.0 | 17.0 | 58.0 |
| 19 | 304.0 | 38.0 | 61.0 | 32.0 |
| 20 | 87.0 | 45.0 | 46.0 | 257.0 |
| 21 | 15.0 | 56.0 | 72.0 | 292.0 |
| 22 | 55.0 | 168.0 | 48.0 | 164.0 |
| 23 | 162.0 | 104.0 | 90.0 | 79.0 |
| 24 | 37.0 | 67.0 | 68.0 | 263.0 |
| 25 | 48.0 | 73.0 | 204.0 | 110.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.34 | -0.476 | -0.254 | 0.637 |
| 02 | -1.026 | -1.252 | -0.801 | 1.067 |
| 03 | -1.784 | -1.84 | 0.318 | 0.833 |
| 04 | 0.113 | -0.314 | -0.552 | 0.453 |
| 05 | -0.165 | 0.337 | 0.311 | -0.953 |
| 06 | -2.099 | 1.212 | -1.784 | -1.052 |
| 07 | 1.092 | -1.388 | -1.732 | -0.521 |
| 08 | -0.821 | 0.324 | -0.419 | 0.418 |
| 09 | 0.436 | -0.044 | -0.885 | 0.081 |
| 10 | 0.122 | -0.907 | -0.584 | 0.647 |
| 11 | 0.02 | -0.761 | 0.707 | -0.723 |
| 12 | -0.208 | -0.379 | -0.254 | 0.547 |
| 13 | -1.634 | 0.693 | 0.448 | -1.425 |
| 14 | -2.561 | -2.45 | -3.779 | 1.339 |
| 15 | -2.686 | -1.589 | 1.29 | -2.35 |
| 16 | -1.191 | -0.977 | -2.259 | 1.168 |
| 17 | -2.259 | 0.531 | 0.471 | -0.521 |
| 18 | 1.136 | -1.732 | -1.784 | -0.617 |
| 19 | 1.019 | -1.026 | -0.567 | -1.191 |
| 20 | -0.22 | -0.863 | -0.842 | 0.852 |
| 21 | -1.898 | -0.651 | -0.405 | 0.979 |
| 22 | -0.668 | 0.43 | -0.801 | 0.406 |
| 23 | 0.394 | -0.044 | -0.186 | -0.314 |
| 24 | -1.052 | -0.476 | -0.461 | 0.875 |
| 25 | -0.801 | -0.392 | 0.623 | 0.011 |