Model info
| Transcription factor | BRCA1 (GeneCards) | ||||||||
| Model | BRCA1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bKKbKGTTG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 72 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | HGNC:1100 | ||||||||
| EntrezGene | GeneID:672 (SSTAR profile) | ||||||||
| UniProt ID | BRCA1_HUMAN | ||||||||
| UniProt AC | P38398 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | BRCA1 expression | ||||||||
| ReMap ChIP-seq dataset list | BRCA1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.453 | 14.311 | 21.08 | 26.727 |
| 02 | 13.75 | 0.0 | 19.993 | 38.827 |
| 03 | 2.034 | 9.084 | 11.119 | 50.333 |
| 04 | 4.069 | 25.009 | 34.969 | 8.524 |
| 05 | 2.034 | 10.874 | 32.725 | 26.938 |
| 06 | 0.0 | 0.0 | 63.17 | 9.4 |
| 07 | 0.0 | 2.034 | 0.0 | 70.536 |
| 08 | 0.0 | 0.0 | 0.0 | 72.57 |
| 09 | 4.577 | 5.314 | 60.137 | 2.543 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.511 | -0.222 | 0.142 | 0.369 |
| 02 | -0.26 | -2.887 | 0.092 | 0.731 |
| 03 | -1.822 | -0.638 | -0.455 | 0.984 |
| 04 | -1.319 | 0.306 | 0.629 | -0.694 |
| 05 | -1.822 | -0.475 | 0.565 | 0.377 |
| 06 | -2.887 | -2.887 | 1.207 | -0.607 |
| 07 | -2.887 | -1.822 | -2.887 | 1.316 |
| 08 | -2.887 | -2.887 | -2.887 | 1.344 |
| 09 | -1.224 | -1.102 | 1.159 | -1.671 |