COE1_HUMAN.H11DI.0.A motif - HOmo sapiens COmprehensive MOdel COllection

Transcription factor

EBF1
(GeneCards)

Model

COE1_HUMAN.H11DI.0.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv10

Model length

Quality

Motif rank

Consensus

nnnnnndbYCCCMWGGGRvhnbn

Best auROC (human)

0.996

Best auROC (mouse)

0.994

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

506

TF family

Early B-Cell Factor-related factors {6.1.5}

TF subfamily

EBF1 (COE1) {6.1.5.0.1}

HGNC

HGNC:3126

EntrezGene

GeneID:1879
(SSTAR profile)

UniProt ID

COE1_HUMAN

UniProt AC

Q9UH73
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.95501
0.0005	7.563510000000001
0.0001	13.41351

GTEx tissue expression atlas

EBF1 expression

ReMap ChIP-seq dataset list

EBF1 datasets

Motifs in JASPAR

MA0154.1 (EBF1; Mus musculus)

MA0154.2 (EBF1; Homo sapiens)

MA0154.3 (EBF1; Homo sapiens)

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	22.909	35.022	34.851	14.995	32.604	76.363	4.83	33.701	26.947	26.488	33.833	27.521	7.463	30.807	23.566	18.615
02	9.851	34.757	29.33	15.985	30.077	73.356	11.272	53.974	20.055	23.933	38.529	14.562	8.035	29.082	40.975	16.74
03	12.795	20.531	25.921	8.77	36.631	65.767	7.356	51.374	27.669	38.259	24.524	29.654	25.553	29.77	34.078	11.861
04	18.903	31.547	43.782	8.417	42.366	46.596	8.955	56.411	12.736	41.569	23.901	13.674	6.524	38.329	35.24	21.565
05	19.871	11.409	38.954	10.296	75.136	25.233	11.115	46.557	39.017	22.879	30.804	19.177	21.253	18.279	35.796	24.738
06	57.848	12.859	57.091	27.479	23.903	17.637	10.207	26.053	31.427	9.768	44.687	30.787	19.84	14.435	46.732	19.761
07	22.885	28.767	41.084	40.283	7.948	27.87	7.507	11.374	12.868	36.658	83.214	25.976	5.48	23.023	57.452	18.125
08	1.821	6.565	3.723	37.073	2.052	9.731	0.0	104.535	3.627	45.963	3.802	135.865	0.0	33.611	5.926	56.22
09	0.0	7.5	0.0	0.0	0.0	95.871	0.0	0.0	0.0	13.451	0.0	0.0	0.0	333.692	0.0	0.0
10	0.0	0.0	0.0	0.0	0.0	386.558	0.0	63.956	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
11	0.0	0.0	0.0	0.0	1.594	380.923	0.906	3.134	0.0	0.0	0.0	0.0	0.0	63.956	0.0	0.0
12	0.0	1.594	0.0	0.0	93.228	320.951	1.046	29.655	0.0	0.906	0.0	0.0	0.0	2.198	0.936	0.0
13	60.738	0.0	0.0	32.49	178.699	11.125	4.033	131.792	1.982	0.0	0.0	0.0	28.797	0.858	0.0	0.0
14	0.889	0.0	268.212	1.116	0.0	0.0	11.983	0.0	0.0	0.0	4.033	0.0	0.0	0.0	164.282	0.0
15	0.0	0.0	0.889	0.0	0.0	0.0	0.0	0.0	71.69	0.0	372.583	4.237	0.0	0.0	1.116	0.0
16	0.0	1.983	69.706	0.0	0.0	0.0	0.0	0.0	1.179	1.7	371.708	0.0	0.0	0.0	4.237	0.0
17	0.0	0.0	1.179	0.0	3.683	0.0	0.0	0.0	329.877	14.752	78.621	22.401	0.0	0.0	0.0	0.0
18	56.243	131.441	109.954	35.923	5.227	7.429	0.0	2.097	12.75	53.795	9.535	3.72	4.214	5.793	12.394	0.0
19	8.394	27.327	9.685	33.029	41.684	72.565	7.64	76.568	31.83	46.27	37.048	16.734	2.133	9.285	12.572	17.75
20	15.449	23.013	34.797	10.781	43.304	55.118	9.336	47.689	10.44	16.849	28.274	11.382	24.767	22.417	60.659	36.237
21	18.742	27.642	43.695	3.881	29.173	31.756	16.514	39.954	18.084	33.14	62.927	18.914	6.336	18.623	60.731	20.4
22	17.677	31.719	15.4	7.54	39.853	20.493	11.701	39.115	60.734	63.547	38.664	20.922	6.102	18.325	38.651	20.07

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	-0.203	0.216	0.211	-0.618	0.145	0.989	-1.7	0.178	-0.043	-0.06	0.181	-0.023	-1.291	0.089	-0.175	-0.407
02	-1.026	0.208	0.04	-0.556	0.065	0.949	-0.896	0.644	-0.334	-0.16	0.31	-0.647	-1.221	0.032	0.371	-0.511
03	-0.773	-0.311	-0.082	-1.137	0.26	0.841	-1.305	0.595	-0.017	0.303	-0.136	0.051	-0.096	0.055	0.189	-0.846
04	-0.392	0.112	0.437	-1.177	0.404	0.498	-1.117	0.688	-0.777	0.385	-0.162	-0.708	-1.419	0.305	0.222	-0.263
05	-0.343	-0.884	0.321	-0.983	0.973	-0.108	-0.909	0.498	0.322	-0.204	0.089	-0.378	-0.277	-0.425	0.237	-0.128
06	0.713	-0.768	0.7	-0.024	-0.161	-0.46	-0.991	-0.077	0.108	-1.034	0.457	0.088	-0.344	-0.655	0.501	-0.348
07	-0.204	0.021	0.374	0.354	-1.231	-0.01	-1.286	-0.887	-0.767	0.261	1.075	-0.08	-1.583	-0.198	0.706	-0.433
08	-2.562	-1.413	-1.939	0.272	-2.462	-1.037	-4.314	1.302	-1.963	0.485	-1.92	1.563	-4.314	0.175	-1.509	0.685
09	-4.314	-1.287	-4.314	-4.314	-4.314	1.216	-4.314	-4.314	-4.314	-0.724	-4.314	-4.314	-4.314	2.46	-4.314	-4.314
10	-4.314	-4.314	-4.314	-4.314	-4.314	2.607	-4.314	0.813	-4.314	-4.314	-4.314	-4.314	-4.314	-4.314	-4.314	-4.314
11	-4.314	-4.314	-4.314	-4.314	-2.67	2.592	-3.099	-2.094	-4.314	-4.314	-4.314	-4.314	-4.314	0.813	-4.314	-4.314
12	-4.314	-2.67	-4.314	-4.314	1.188	2.421	-2.995	0.051	-4.314	-3.099	-4.314	-4.314	-4.314	-2.403	-3.075	-4.314
13	0.762	-4.314	-4.314	0.141	1.837	-0.908	-1.866	1.533	-2.491	-4.314	-4.314	-4.314	0.022	-3.137	-4.314	-4.314
14	-3.112	-4.314	2.242	-2.947	-4.314	-4.314	-0.836	-4.314	-4.314	-4.314	-1.866	-4.314	-4.314	-4.314	1.753	-4.314
15	-4.314	-4.314	-3.112	-4.314	-4.314	-4.314	-4.314	-4.314	0.926	-4.314	2.57	-1.821	-4.314	-4.314	-2.947	-4.314
16	-4.314	-2.49	0.898	-4.314	-4.314	-4.314	-4.314	-4.314	-2.906	-2.618	2.568	-4.314	-4.314	-4.314	-1.821	-4.314
17	-4.314	-4.314	-2.906	-4.314	-1.949	-4.314	-4.314	-4.314	2.449	-0.634	1.018	-0.225	-4.314	-4.314	-4.314	-4.314
18	0.685	1.53	1.352	0.241	-1.627	-1.296	-4.314	-2.444	-0.776	0.641	-1.057	-1.94	-1.826	-1.531	-0.804	-4.314
19	-1.179	-0.03	-1.042	0.158	0.388	0.938	-1.269	0.992	0.121	0.491	0.271	-0.511	-2.429	-1.083	-0.79	-0.454
20	-0.589	-0.199	0.209	-0.939	0.426	0.665	-1.077	0.521	-0.97	-0.505	0.004	-0.886	-0.126	-0.225	0.76	0.249
21	-0.4	-0.018	0.435	-1.901	0.035	0.119	-0.524	0.346	-0.435	0.161	0.797	-0.391	-1.446	-0.407	0.761	-0.317
22	-0.458	0.118	-0.592	-1.282	0.343	-0.313	-0.859	0.325	0.761	0.807	0.313	-0.292	-1.482	-0.422	0.313	-0.333