Model info
| Transcription factor | Nr2f1 | ||||||||
| Model | COT1_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | SdbYWRAGKTCA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 84 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F) {2.1.3.5} | ||||||||
| MGI | MGI:1352451 | ||||||||
| EntrezGene | GeneID:13865 (SSTAR profile) | ||||||||
| UniProt ID | COT1_MOUSE | ||||||||
| UniProt AC | Q60632 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr2f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.985 | 9.625 | 58.448 | 6.943 |
| 02 | 7.613 | 6.188 | 40.161 | 28.037 |
| 03 | 9.136 | 18.817 | 20.228 | 33.82 |
| 04 | 8.381 | 57.387 | 5.113 | 11.12 |
| 05 | 62.234 | 6.202 | 3.772 | 9.792 |
| 06 | 49.969 | 4.274 | 20.968 | 6.789 |
| 07 | 59.454 | 0.0 | 21.708 | 0.838 |
| 08 | 1.425 | 0.0 | 80.575 | 0.0 |
| 09 | 1.592 | 3.688 | 53.46 | 23.26 |
| 10 | 3.185 | 6.44 | 2.347 | 70.029 |
| 11 | 0.754 | 71.076 | 5.49 | 4.68 |
| 12 | 66.878 | 8.207 | 3.709 | 3.206 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.983 | -0.7 | 1.014 | -0.988 |
| 02 | -0.908 | -1.086 | 0.647 | 0.299 |
| 03 | -0.747 | -0.081 | -0.013 | 0.48 |
| 04 | -0.823 | 0.996 | -1.246 | -0.57 |
| 05 | 1.076 | -1.084 | -1.489 | -0.685 |
| 06 | 0.86 | -1.391 | 0.021 | -1.007 |
| 07 | 1.031 | -2.976 | 0.054 | -2.41 |
| 08 | -2.146 | -2.976 | 1.33 | -2.976 |
| 09 | -2.082 | -1.506 | 0.927 | 0.12 |
| 10 | -1.617 | -1.052 | -1.835 | 1.192 |
| 11 | -2.454 | 1.206 | -1.187 | -1.318 |
| 12 | 1.146 | -0.842 | -1.502 | -1.612 |