Model info
| Transcription factor | CTCFL (GeneCards) | ||||||||
| Model | CTCFL_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bCCdShAGGKGGCGShv | ||||||||
| Best auROC (human) | 0.974 | ||||||||
| Best auROC (mouse) | 0.993 | ||||||||
| Peak sets in benchmark (human) | 25 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 450 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | CTCF-like factors {2.3.3.50} | ||||||||
| HGNC | HGNC:16234 | ||||||||
| EntrezGene | GeneID:140690 (SSTAR profile) | ||||||||
| UniProt ID | CTCFL_HUMAN | ||||||||
| UniProt AC | Q8NI51 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CTCFL expression | ||||||||
| ReMap ChIP-seq dataset list | CTCFL datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 75.0 | 82.0 | 199.0 | 94.0 |
| 02 | 20.0 | 375.0 | 33.0 | 22.0 |
| 03 | 8.0 | 424.0 | 12.0 | 6.0 |
| 04 | 153.0 | 31.0 | 168.0 | 98.0 |
| 05 | 56.0 | 201.0 | 188.0 | 5.0 |
| 06 | 64.0 | 230.0 | 41.0 | 115.0 |
| 07 | 393.0 | 20.0 | 14.0 | 23.0 |
| 08 | 4.0 | 5.0 | 440.0 | 1.0 |
| 09 | 104.0 | 0.0 | 340.0 | 6.0 |
| 10 | 36.0 | 41.0 | 330.0 | 43.0 |
| 11 | 4.0 | 1.0 | 442.0 | 3.0 |
| 12 | 5.0 | 6.0 | 421.0 | 18.0 |
| 13 | 37.0 | 404.0 | 2.0 | 7.0 |
| 14 | 95.0 | 2.0 | 346.0 | 7.0 |
| 15 | 13.0 | 318.0 | 93.0 | 26.0 |
| 16 | 58.0 | 184.0 | 35.0 | 173.0 |
| 17 | 119.0 | 118.0 | 171.0 | 42.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.399 | -0.311 | 0.565 | -0.177 |
| 02 | -1.667 | 1.195 | -1.195 | -1.578 |
| 03 | -2.482 | 1.317 | -2.132 | -2.718 |
| 04 | 0.304 | -1.254 | 0.397 | -0.136 |
| 05 | -0.684 | 0.574 | 0.508 | -2.86 |
| 06 | -0.554 | 0.708 | -0.986 | 0.022 |
| 07 | 1.241 | -1.667 | -1.994 | -1.537 |
| 08 | -3.027 | -2.86 | 1.354 | -3.809 |
| 09 | -0.077 | -4.313 | 1.097 | -2.718 |
| 10 | -1.111 | -0.986 | 1.067 | -0.94 |
| 11 | -3.027 | -3.809 | 1.358 | -3.226 |
| 12 | -2.86 | -2.718 | 1.31 | -1.765 |
| 13 | -1.085 | 1.269 | -3.476 | -2.593 |
| 14 | -0.167 | -3.476 | 1.114 | -2.593 |
| 15 | -2.06 | 1.03 | -0.188 | -1.421 |
| 16 | -0.65 | 0.487 | -1.138 | 0.426 |
| 17 | 0.055 | 0.047 | 0.414 | -0.963 |