Model info
| Transcription factor | Ctcfl | ||||||||
| Model | CTCFL_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCCdSYAGGKGGCGChvb | ||||||||
| Best auROC (human) | 0.97 | ||||||||
| Best auROC (mouse) | 0.996 | ||||||||
| Peak sets in benchmark (human) | 25 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 495 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | CTCF-like factors {2.3.3.50} | ||||||||
| MGI | MGI:3652571 | ||||||||
| EntrezGene | GeneID:664799 (SSTAR profile) | ||||||||
| UniProt ID | CTCFL_MOUSE | ||||||||
| UniProt AC | A2APF3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ctcfl expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 96.0 | 100.0 | 236.0 | 63.0 |
| 02 | 27.0 | 405.0 | 42.0 | 21.0 |
| 03 | 8.0 | 479.0 | 4.0 | 4.0 |
| 04 | 170.0 | 53.0 | 197.0 | 75.0 |
| 05 | 48.0 | 252.0 | 190.0 | 5.0 |
| 06 | 26.0 | 294.0 | 40.0 | 135.0 |
| 07 | 446.0 | 13.0 | 25.0 | 11.0 |
| 08 | 2.0 | 2.0 | 491.0 | 0.0 |
| 09 | 84.0 | 0.0 | 409.0 | 2.0 |
| 10 | 22.0 | 26.0 | 390.0 | 57.0 |
| 11 | 4.0 | 2.0 | 487.0 | 2.0 |
| 12 | 1.0 | 9.0 | 466.0 | 19.0 |
| 13 | 23.0 | 469.0 | 0.0 | 3.0 |
| 14 | 67.0 | 1.0 | 425.0 | 2.0 |
| 15 | 11.0 | 390.0 | 74.0 | 20.0 |
| 16 | 55.0 | 193.0 | 47.0 | 200.0 |
| 17 | 116.0 | 155.0 | 197.0 | 27.0 |
| 18 | 42.0 | 181.0 | 129.0 | 143.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.25 | -0.21 | 0.64 | -0.663 |
| 02 | -1.479 | 1.177 | -1.057 | -1.715 |
| 03 | -2.574 | 1.344 | -3.117 | -3.117 |
| 04 | 0.314 | -0.832 | 0.46 | -0.493 |
| 05 | -0.928 | 0.705 | 0.424 | -2.951 |
| 06 | -1.515 | 0.858 | -1.104 | 0.086 |
| 07 | 1.273 | -2.153 | -1.552 | -2.301 |
| 08 | -3.563 | -3.563 | 1.369 | -4.392 |
| 09 | -0.382 | -4.392 | 1.187 | -3.563 |
| 10 | -1.672 | -1.515 | 1.139 | -0.761 |
| 11 | -3.117 | -3.563 | 1.361 | -3.563 |
| 12 | -3.894 | -2.474 | 1.317 | -1.808 |
| 13 | -1.63 | 1.323 | -4.392 | -3.315 |
| 14 | -0.603 | -3.894 | 1.225 | -3.563 |
| 15 | -2.301 | 1.139 | -0.506 | -1.76 |
| 16 | -0.796 | 0.44 | -0.948 | 0.475 |
| 17 | -0.064 | 0.223 | 0.46 | -1.479 |
| 18 | -1.057 | 0.376 | 0.041 | 0.143 |