Model info
| Transcription factor | CUX2 (GeneCards) | ||||||||
| Model | CUX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hRRTCAATvvv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.867 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 496 | ||||||||
| TF family | HD-CUT factors {3.1.9} | ||||||||
| TF subfamily | CUX {3.1.9.2} | ||||||||
| HGNC | HGNC:19347 | ||||||||
| EntrezGene | GeneID:23316 (SSTAR profile) | ||||||||
| UniProt ID | CUX2_HUMAN | ||||||||
| UniProt AC | O14529 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CUX2 expression | ||||||||
| ReMap ChIP-seq dataset list | CUX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 229.0 | 93.0 | 50.0 | 117.0 |
| 02 | 280.0 | 17.0 | 162.0 | 30.0 |
| 03 | 351.0 | 41.0 | 76.0 | 21.0 |
| 04 | 38.0 | 25.0 | 23.0 | 403.0 |
| 05 | 5.0 | 458.0 | 22.0 | 4.0 |
| 06 | 407.0 | 32.0 | 39.0 | 11.0 |
| 07 | 387.0 | 83.0 | 11.0 | 8.0 |
| 08 | 36.0 | 3.0 | 47.0 | 403.0 |
| 09 | 173.0 | 89.0 | 198.0 | 29.0 |
| 10 | 259.0 | 82.0 | 98.0 | 50.0 |
| 11 | 216.0 | 103.0 | 93.0 | 77.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.622 | -0.27 | -0.876 | -0.043 |
| 02 | 0.822 | -1.898 | 0.278 | -1.367 |
| 03 | 1.047 | -1.068 | -0.468 | -1.703 |
| 04 | -1.141 | -1.54 | -1.618 | 1.184 |
| 05 | -2.939 | 1.312 | -1.66 | -3.105 |
| 06 | 1.194 | -1.306 | -1.116 | -2.289 |
| 07 | 1.144 | -0.381 | -2.289 | -2.562 |
| 08 | -1.193 | -3.304 | -0.936 | 1.184 |
| 09 | 0.344 | -0.313 | 0.477 | -1.399 |
| 10 | 0.744 | -0.393 | -0.218 | -0.876 |
| 11 | 0.564 | -0.169 | -0.27 | -0.455 |