Model info
| Transcription factor | Esrra | ||||||||
| Model | ERR1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddnYCAAGGTCA | ||||||||
| Best auROC (human) | 0.95 | ||||||||
| Best auROC (mouse) | 0.982 | ||||||||
| Peak sets in benchmark (human) | 31 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
| MGI | MGI:1346831 | ||||||||
| EntrezGene | GeneID:26379 (SSTAR profile) | ||||||||
| UniProt ID | ERR1_MOUSE | ||||||||
| UniProt AC | O08580 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Esrra expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 200.0 | 89.0 | 93.0 | 118.0 |
| 02 | 81.0 | 63.0 | 245.0 | 111.0 |
| 03 | 39.0 | 153.0 | 155.0 | 153.0 |
| 04 | 12.0 | 132.0 | 38.0 | 318.0 |
| 05 | 31.0 | 408.0 | 60.0 | 1.0 |
| 06 | 470.0 | 3.0 | 27.0 | 0.0 |
| 07 | 497.0 | 0.0 | 3.0 | 0.0 |
| 08 | 0.0 | 0.0 | 496.0 | 4.0 |
| 09 | 0.0 | 0.0 | 498.0 | 2.0 |
| 10 | 6.0 | 3.0 | 23.0 | 468.0 |
| 11 | 0.0 | 475.0 | 10.0 | 15.0 |
| 12 | 495.0 | 0.0 | 5.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.465 | -0.335 | -0.291 | -0.057 |
| 02 | -0.427 | -0.673 | 0.667 | -0.117 |
| 03 | -1.138 | 0.2 | 0.213 | 0.2 |
| 04 | -2.234 | 0.054 | -1.163 | 0.926 |
| 05 | -1.358 | 1.174 | -0.721 | -3.903 |
| 06 | 1.315 | -3.325 | -1.489 | -4.4 |
| 07 | 1.371 | -4.4 | -3.325 | -4.4 |
| 08 | -4.4 | -4.4 | 1.369 | -3.126 |
| 09 | -4.4 | -4.4 | 1.373 | -3.573 |
| 10 | -2.819 | -3.325 | -1.64 | 1.311 |
| 11 | -4.4 | 1.326 | -2.394 | -2.034 |
| 12 | 1.367 | -4.4 | -2.961 | -4.4 |