Model info
| Transcription factor | Esr1 | ||||||||
| Model | ESR1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RKGWCASCvTGhYCY | ||||||||
| Best auROC (human) | 0.966 | ||||||||
| Best auROC (mouse) | 0.993 | ||||||||
| Peak sets in benchmark (human) | 432 | ||||||||
| Peak sets in benchmark (mouse) | 58 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
| MGI | MGI:1352467 | ||||||||
| EntrezGene | GeneID:13982 (SSTAR profile) | ||||||||
| UniProt ID | ESR1_MOUSE | ||||||||
| UniProt AC | P19785 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Esr1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 279.0 | 23.0 | 153.0 | 45.0 |
| 02 | 47.0 | 3.0 | 384.0 | 66.0 |
| 03 | 49.0 | 36.0 | 402.0 | 13.0 |
| 04 | 121.0 | 35.0 | 54.0 | 290.0 |
| 05 | 1.0 | 425.0 | 59.0 | 15.0 |
| 06 | 464.0 | 3.0 | 23.0 | 10.0 |
| 07 | 37.0 | 281.0 | 141.0 | 41.0 |
| 08 | 219.0 | 281.0 | 0.0 | 0.0 |
| 09 | 84.0 | 238.0 | 123.0 | 55.0 |
| 10 | 38.0 | 26.0 | 7.0 | 429.0 |
| 11 | 13.0 | 14.0 | 469.0 | 4.0 |
| 12 | 275.0 | 79.0 | 37.0 | 109.0 |
| 13 | 33.0 | 397.0 | 22.0 | 48.0 |
| 14 | 52.0 | 409.0 | 0.0 | 39.0 |
| 15 | 35.0 | 188.0 | 27.0 | 250.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.796 | -1.64 | 0.2 | -1.0 |
| 02 | -0.958 | -3.325 | 1.114 | -0.628 |
| 03 | -0.918 | -1.215 | 1.16 | -2.163 |
| 04 | -0.032 | -1.242 | -0.823 | 0.835 |
| 05 | -3.903 | 1.215 | -0.737 | -2.034 |
| 06 | 1.303 | -3.325 | -1.64 | -2.394 |
| 07 | -1.189 | 0.803 | 0.119 | -1.09 |
| 08 | 0.555 | 0.803 | -4.4 | -4.4 |
| 09 | -0.392 | 0.638 | -0.016 | -0.805 |
| 10 | -1.163 | -1.525 | -2.694 | 1.224 |
| 11 | -2.163 | -2.096 | 1.313 | -3.126 |
| 12 | 0.782 | -0.452 | -1.189 | -0.135 |
| 13 | -1.298 | 1.147 | -1.681 | -0.938 |
| 14 | -0.86 | 1.177 | -4.4 | -1.138 |
| 15 | -1.242 | 0.404 | -1.489 | 0.687 |