Model info
| Transcription factor | Foxq1 | ||||||||
| Model | FOXQ1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nRTTGTTTATKT | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 13 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXQ {3.3.1.17} | ||||||||
| MGI | MGI:1298228 | ||||||||
| EntrezGene | GeneID:15220 (SSTAR profile) | ||||||||
| UniProt ID | FOXQ1_MOUSE | ||||||||
| UniProt AC | O70220 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Foxq1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.0 | 4.0 | 1.0 | 4.0 |
| 02 | 9.0 | 1.0 | 3.0 | 0.0 |
| 03 | 1.0 | 2.0 | 0.0 | 10.0 |
| 04 | 0.0 | 0.0 | 0.0 | 13.0 |
| 05 | 0.0 | 0.0 | 13.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 13.0 |
| 07 | 0.0 | 0.0 | 0.0 | 13.0 |
| 08 | 0.0 | 0.0 | 0.0 | 13.0 |
| 09 | 13.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 1.0 | 12.0 |
| 11 | 2.0 | 0.0 | 3.0 | 8.0 |
| 12 | 0.0 | 4.0 | 0.0 | 9.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.176 | 0.176 | -0.863 | 0.176 |
| 02 | 0.907 | -0.863 | -0.066 | -1.803 |
| 03 | -0.863 | -0.387 | -1.803 | 1.006 |
| 04 | -1.803 | -1.803 | -1.803 | 1.254 |
| 05 | -1.803 | -1.803 | 1.254 | -1.803 |
| 06 | -1.803 | -1.803 | -1.803 | 1.254 |
| 07 | -1.803 | -1.803 | -1.803 | 1.254 |
| 08 | -1.803 | -1.803 | -1.803 | 1.254 |
| 09 | 1.254 | -1.803 | -1.803 | -1.803 |
| 10 | -1.803 | -1.803 | -0.863 | 1.178 |
| 11 | -0.387 | -1.803 | -0.066 | 0.798 |
| 12 | -1.803 | 0.176 | -1.803 | 0.907 |