Model info
| Transcription factor | GATA4 (GeneCards) | ||||||||
| Model | GATA4_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvWGATAASR | ||||||||
| Best auROC (human) | 0.955 | ||||||||
| Best auROC (mouse) | 0.94 | ||||||||
| Peak sets in benchmark (human) | 15 | ||||||||
| Peak sets in benchmark (mouse) | 17 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:4173 | ||||||||
| EntrezGene | GeneID:2626 (SSTAR profile) | ||||||||
| UniProt ID | GATA4_HUMAN | ||||||||
| UniProt AC | P43694 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA4 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 184.0 | 64.0 | 156.0 | 96.0 |
| 02 | 94.0 | 215.0 | 142.0 | 49.0 |
| 03 | 332.0 | 4.0 | 8.0 | 156.0 |
| 04 | 2.0 | 0.0 | 498.0 | 0.0 |
| 05 | 490.0 | 2.0 | 4.0 | 4.0 |
| 06 | 4.0 | 11.0 | 20.0 | 465.0 |
| 07 | 481.0 | 2.0 | 2.0 | 15.0 |
| 08 | 459.0 | 1.0 | 35.0 | 5.0 |
| 09 | 47.0 | 91.0 | 349.0 | 13.0 |
| 10 | 285.0 | 71.0 | 128.0 | 16.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.383 | -0.658 | 0.219 | -0.26 |
| 02 | -0.281 | 0.537 | 0.126 | -0.918 |
| 03 | 0.969 | -3.126 | -2.584 | 0.219 |
| 04 | -3.573 | -4.4 | 1.373 | -4.4 |
| 05 | 1.357 | -3.573 | -3.126 | -3.126 |
| 06 | -3.126 | -2.311 | -1.77 | 1.305 |
| 07 | 1.338 | -3.573 | -3.573 | -2.034 |
| 08 | 1.292 | -3.903 | -1.242 | -2.961 |
| 09 | -0.958 | -0.313 | 1.019 | -2.163 |
| 10 | 0.817 | -0.556 | 0.023 | -1.975 |