Model info
| Transcription factor | Gata6 | ||||||||
| Model | GATA6_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvWGATAASv | ||||||||
| Best auROC (human) | 0.958 | ||||||||
| Best auROC (mouse) | 0.968 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| MGI | MGI:107516 | ||||||||
| EntrezGene | GeneID:14465 (SSTAR profile) | ||||||||
| UniProt ID | GATA6_MOUSE | ||||||||
| UniProt AC | Q61169 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gata6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 142.0 | 82.0 | 188.0 | 88.0 |
| 02 | 68.0 | 167.0 | 207.0 | 58.0 |
| 03 | 314.0 | 31.0 | 9.0 | 146.0 |
| 04 | 5.0 | 1.0 | 492.0 | 2.0 |
| 05 | 492.0 | 3.0 | 3.0 | 2.0 |
| 06 | 11.0 | 13.0 | 23.0 | 453.0 |
| 07 | 468.0 | 3.0 | 4.0 | 25.0 |
| 08 | 437.0 | 15.0 | 42.0 | 6.0 |
| 09 | 58.0 | 75.0 | 344.0 | 23.0 |
| 10 | 140.0 | 105.0 | 232.0 | 23.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.126 | -0.415 | 0.404 | -0.346 |
| 02 | -0.599 | 0.287 | 0.5 | -0.754 |
| 03 | 0.914 | -1.358 | -2.484 | 0.154 |
| 04 | -2.961 | -3.903 | 1.361 | -3.573 |
| 05 | 1.361 | -3.325 | -3.325 | -3.573 |
| 06 | -2.311 | -2.163 | -1.64 | 1.279 |
| 07 | 1.311 | -3.325 | -3.126 | -1.561 |
| 08 | 1.243 | -2.034 | -1.067 | -2.819 |
| 09 | -0.754 | -0.503 | 1.004 | -1.64 |
| 10 | 0.112 | -0.172 | 0.613 | -1.64 |