Model info
| Transcription factor | Nr3c1 | ||||||||
| Model | GCR_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGdACAbAvWGThCY | ||||||||
| Best auROC (human) | 0.978 | ||||||||
| Best auROC (mouse) | 0.99 | ||||||||
| Peak sets in benchmark (human) | 143 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
| MGI | MGI:95824 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | GCR_MOUSE | ||||||||
| UniProt AC | P06537 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr3c1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 233.0 | 10.0 | 202.0 | 55.0 |
| 02 | 34.0 | 4.0 | 422.0 | 40.0 |
| 03 | 175.0 | 83.0 | 158.0 | 84.0 |
| 04 | 431.0 | 13.0 | 12.0 | 44.0 |
| 05 | 0.0 | 486.0 | 9.0 | 5.0 |
| 06 | 409.0 | 9.0 | 25.0 | 57.0 |
| 07 | 76.0 | 125.0 | 202.0 | 97.0 |
| 08 | 315.0 | 0.0 | 185.0 | 0.0 |
| 09 | 189.0 | 129.0 | 150.0 | 32.0 |
| 10 | 83.0 | 43.0 | 21.0 | 353.0 |
| 11 | 11.0 | 3.0 | 483.0 | 3.0 |
| 12 | 27.0 | 9.0 | 16.0 | 448.0 |
| 13 | 81.0 | 159.0 | 70.0 | 190.0 |
| 14 | 27.0 | 433.0 | 2.0 | 38.0 |
| 15 | 54.0 | 194.0 | 17.0 | 235.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.617 | -2.394 | 0.475 | -0.805 |
| 02 | -1.27 | -3.126 | 1.208 | -1.114 |
| 03 | 0.333 | -0.403 | 0.232 | -0.392 |
| 04 | 1.229 | -2.163 | -2.234 | -1.022 |
| 05 | -4.4 | 1.349 | -2.484 | -2.961 |
| 06 | 1.177 | -2.484 | -1.561 | -0.771 |
| 07 | -0.49 | 0.0 | 0.475 | -0.25 |
| 08 | 0.917 | -4.4 | 0.388 | -4.4 |
| 09 | 0.409 | 0.031 | 0.18 | -1.328 |
| 10 | -0.403 | -1.044 | -1.725 | 1.03 |
| 11 | -2.311 | -3.325 | 1.343 | -3.325 |
| 12 | -1.489 | -2.484 | -1.975 | 1.268 |
| 13 | -0.427 | 0.238 | -0.57 | 0.415 |
| 14 | -1.489 | 1.234 | -3.573 | -1.163 |
| 15 | -0.823 | 0.435 | -1.92 | 0.626 |