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Model info
Transcription factorGfi1b
ModelGFI1B_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdKCWSWGATTKn
Best auROC (human)0.881
Best auROC (mouse)0.899
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words524
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGFI1 factors {2.3.3.21}
MGIMGI:1276578
EntrezGeneGeneID:14582
(SSTAR profile)
UniProt IDGFI1B_MOUSE
UniProt ACO70237
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.363945000000001
0.0005 12.40492
0.0001 16.21715
GTEx tissue expression atlas Gfi1b expression
Motifs in JASPAR
MA0483.1 (Gfi1b; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0125.00.094.06.025.05.019.011.012.011.089.016.016.010.0115.046.0
029.058.09.02.00.023.03.00.027.0254.012.024.03.071.03.02.0
0322.02.01.014.0149.042.03.0212.09.03.00.015.05.04.01.018.0
042.081.0100.02.01.025.025.00.00.05.00.00.00.032.0188.039.0
050.00.00.03.056.02.01.084.0125.08.09.0171.01.01.00.039.0
060.04.0175.03.00.00.010.01.00.02.08.00.00.01.0292.04.0
070.00.00.00.04.00.03.00.0384.02.099.00.04.01.03.00.0
080.00.05.0387.00.00.01.02.01.01.02.0101.00.00.00.00.0
090.00.00.01.00.00.00.01.00.00.00.08.09.02.05.0474.0
105.01.02.01.01.00.01.00.01.03.01.00.032.043.061.0348.0
1116.013.05.05.017.09.010.011.014.023.017.011.058.0104.097.090.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.22-4.41.093-1.6-0.22-1.77-0.49-1.022-0.938-1.0221.039-0.658-0.658-1.1141.2940.383
02-1.2150.613-1.215-2.584-4.4-0.302-2.234-4.4-0.1442.084-0.938-0.26-2.2340.814-2.234-2.584
03-0.346-2.584-3.126-0.7881.5520.293-2.2341.904-1.215-2.234-4.4-0.721-1.77-1.975-3.126-0.543
04-2.5840.9451.155-2.584-3.126-0.22-0.22-4.4-4.4-1.77-4.4-4.4-4.40.0231.7840.219
05-4.4-4.4-4.4-2.2340.578-2.584-3.1260.9811.377-1.328-1.2151.69-3.126-3.126-4.40.219
06-4.4-1.9751.713-2.234-4.4-4.4-1.114-3.126-4.4-2.584-1.328-4.4-4.4-3.1262.224-1.975
07-4.4-4.4-4.4-4.4-1.975-4.4-2.234-4.42.497-2.5841.145-4.4-1.975-3.126-2.234-4.4
08-4.4-4.4-1.772.505-4.4-4.4-3.126-2.584-3.126-3.126-2.5841.165-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.328-1.215-2.584-1.772.708
10-1.77-3.126-2.584-3.126-3.126-4.4-3.126-4.4-3.126-2.234-3.126-4.40.0230.3160.6632.399
11-0.658-0.86-1.77-1.77-0.599-1.215-1.114-1.022-0.788-0.302-0.599-1.0220.6131.1941.1241.05